Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2181 ATGGCTGTCGCCGGCGATGTTTTCAGGCAGGGTTTGCCGGAAGTGGGTGCCGGGAAACTGCACGTGCTTGCTGTTGATGACAGCCACGTGGACCGCAAGGTCATTGAGCGGTTGCTCAAAATCTCGTCTTGCAAAGTGACGGTGGTGGAAAGTGGAAGCAGGGCTCTGCAGTATCTGGGGTTGGATGGGGATAAGAGTTCCATTGGTCTTGATAGTGTGAAGGTTAATTTGATAATGACAGACTATTCCATGCCGGGGATGACAGGATATGAATTGCTCAAGAAGATAAAGGAGTCATCTGTTTTCAGAGAGATTCCGGTGGTGGTTATGTCGTCTGAGAATATCTTGACCCGAATTGATAGTTGCTTGGAGGAGGGAGCTGAGGAGTTTCTGTTGAAGCCTGTCAAGTTGTCAGATGTAAAACGTGTAACAGATTTCATCATGAGAGGTGAAGGGAAAAACGGAGTACAAAGATCTCAAAAAAGAAGCCGATCCGATGATTGCACTCGATCTCTGTCAACTGCATTATGCGATCCATCATCATCTCCATCATCAGCTGTATCGTACTCGAAGAAGTCTAGATTGAACATGGATTGA 597 0.4673 MAVAGDVFRQGLPEVGAGKLHVLAVDDSHVDRKVIERLLKISSCKVTVVESGSRALQYLGLDGDKSSIGLDSVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRVTDFIMRGEGKNGVQRSQKRSRSDDCTRSLSTALCDPSSSPSSAVSYSKKSRLNMD 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2181 198 Gene3D - 19 186 - -
Ssu1g2181 198 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 195 IPR045279 GO:0009736
Ssu1g2181 198 MobiDBLite consensus disorder prediction 169 198 - -
Ssu1g2181 198 CDD REC_typeA_ARR 22 143 - -
Ssu1g2181 198 Pfam Response regulator receiver domain 22 141 IPR001789 GO:0000160
Ssu1g2181 198 SUPERFAMILY CheY-like 19 149 IPR011006 -
Ssu1g2181 198 MobiDBLite consensus disorder prediction 152 198 - -
Ssu1g2181 198 SMART REC_2 20 144 IPR001789 GO:0000160
Ssu1g2181 198 ProSiteProfiles Response regulatory domain profile. 21 148 IPR001789 GO:0000160
Ssu1g2181 198 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 15 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2181 Ssu-Chr1 62087884 62089893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2181 20 162 Response Regulator Gene Family AT5G62920 75.524 3.32e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu1g2181 Response_reg 1.1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2181 K14492 - gmx:100819165 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2181 1 62087884 62089893 Ssu6g1326 6 21663576 21665608 ECH
Ssu1g2181 1 62087884 62089893 Ssu1g2181 1 62087884 62089893 ECH