Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2180 ATGGACACAGAAAGAAGACCATTGATAACTGGATTCCCAAATAGTATATTGAATCCAAGttatgaagatgatgaagaagaaaagagaatagATATAATGGTCCAAAGGTCCAAAGAATCCAAGCCTCAGATTCCACTGCCATGTGAATCTCCAATCTTGGTTGGTCATGAGAATCAAGTTAAGCCAGAATCACAAATATCATCAGTTTCAACATCACTATCACCAAGGCAACACTTGCCACAATCAGCACCTCCACTTCAACCACTGCAACAATCTTCACCAATGATTCTTGAGAATAAGAAAACtcaaccaccaccatcaccaccaccacctcctcaTCCTCCAACTCgtcctccacctccaccacctgGTCCACCTCCGCTTCCAAAGGCCAGTGGCTTCATTTCATCACTGAAACCCCCACCTGCTCCTAAAgggaaaacaaacataaaaaacacCAAAGAGAGTATGGTAGGGGAGAGTTCAAGAGAGAAGGGTGTTGGTCAAACAAGGCTGAAGCCTCTACACTGGGATAAGGTTGTAGCAAATGTTGATCATTCAACAGTGTGGGATCAGATCAATGATGGCTCTTTCCGGGTTGATGATGAACTAATGGAAACACTCTTTGGATATTCAGCCAGCAACAAAACCCAAGAAAGAAACAGAACTCTTTCCACTTTGGCTAAGTCCAATTCCAGTGCACCAGCTCAAATATTCATTCTTGAGCCTAGAAAATCTCAAAACACTGCAATTGTGCTAAGATCACTTGCCATTTCTCGCAAGGGAATCTTGGATGCAGTTCTTGATGGTCAGGGACTCAGTGTTGAGACACTTGAAAGACTCACTAAAATAGCTCCCACCCAAGAAGAGGAAGCCAAAATCCTCCAATTCAGTGGCAACCCGGATCAGCTTGCTGATGCCGAGTCTTTCCTATACTACATTCTTAAAGCAGTTCCAACAGCATTCAACCGTTTGAAAGCAATGCTTTTCAGGTCGAGTTATGATTGTGAAGTTCTTCAGCTCAAGGAACACCTACAAACACTTGAAAGGGGTTGCAAGGAACTGAGAACTAGTGGTCTGTTTTTGAAACTCCTTGAGGCCATTCTCAAAGCTGGGAACCGGATGAATGCTGGAACTTCAAGAGGTAATGCACAAGGTTTCAACCTGAGTGCTCTTGGAAAACTTTCTGATGTGAAAAGCACAGATGGGAAGACTAGTTTGCTTCACTTTATAGTGGAACAAGTGGTTCAGTCAGAAGGAAAAAGACAAGCTATGTATCAAAAGCATAACCTTCACATACGCAATGGTCAAACAAGCTATGTGAATAGATCTTATTCATATAGCCTGATGCAACAAGAGGCAGATAAAGAATATGTAATGCTTGGTTTGCAAGTGTTAGGTGGGCTAAGTGATGAGTTATCTGAAGCAAAGAAAGCAGCCAGCATTGAGTATCACAATTTCATCACTATGTGTTCCACTCTCAATGCGCATGTTAGTGAAATTAGACAGATTATAACATGCTGTGGCAACACTAGGAGTGGTGGATTTATCAAGGAAATGAAAGGGTTCCTAGAGGAATGTGAGGGAGAACTTAAAGTGGTGAAAGAGGAGCAGGCAAGGATCATGGAGCTTGTGAAAAAAACGAATGAGTACTATCTAGCAGGAGCATCCAAAGACAATATGGTAAACCCCTTtcaactgtttgttattataaagAATTTTGTTGACATGGTAGATCAGGCTTGTATagaactaaaaaggaaggtaGAAAAGAAGAATGTGGGAGTAGAGGCTGTGTCAACAACACCACCTTTGTCACCATCAAAGAGGACGCCACTCAGATTCCCTAACTTCGATTTGTATTTTCCGTCAAATGTATCAGAAACAACATCTTCTAGCCAATCAGAAGATGATTTCTGA 1920 0.387 MDTERRPLITGFPNSILNPSYEDDEEEKRIDIMVQRSKESKPQIPLPCESPILVGHENQVKPESQISSVSTSLSPRQHLPQSAPPLQPLQQSSPMILENKKTQPPPSPPPPPHPPTRPPPPPPGPPPLPKASGFISSLKPPPAPKGKTNIKNTKESMVGESSREKGVGQTRLKPLHWDKVVANVDHSTVWDQINDGSFRVDDELMETLFGYSASNKTQERNRTLSTLAKSNSSAPAQIFILEPRKSQNTAIVLRSLAISRKGILDAVLDGQGLSVETLERLTKIAPTQEEEAKILQFSGNPDQLADAESFLYYILKAVPTAFNRLKAMLFRSSYDCEVLQLKEHLQTLERGCKELRTSGLFLKLLEAILKAGNRMNAGTSRGNAQGFNLSALGKLSDVKSTDGKTSLLHFIVEQVVQSEGKRQAMYQKHNLHIRNGQTSYVNRSYSYSLMQQEADKEYVMLGLQVLGGLSDELSEAKKAASIEYHNFITMCSTLNAHVSEIRQIITCCGNTRSGGFIKEMKGFLEECEGELKVVKEEQARIMELVKKTNEYYLAGASKDNMVNPFQLFVIIKNFVDMVDQACIELKRKVEKKNVGVEAVSTTPPLSPSKRTPLRFPNFDLYFPSNVSETTSSSQSEDDF 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2180 639 Pfam Formin Homology 2 Domain 169 578 IPR015425 -
Ssu1g2180 639 ProSiteProfiles Formin homology-2 (FH2) domain profile. 162 604 IPR015425 -
Ssu1g2180 639 MobiDBLite consensus disorder prediction 157 171 - -
Ssu1g2180 639 MobiDBLite consensus disorder prediction 101 130 - -
Ssu1g2180 639 SUPERFAMILY Formin homology 2 domain (FH2 domain) 118 592 - -
Ssu1g2180 639 PANTHER FORMIN-LIKE PROTEIN 2 635 - -
Ssu1g2180 639 MobiDBLite consensus disorder prediction 1 171 - -
Ssu1g2180 639 MobiDBLite consensus disorder prediction 60 100 - -
Ssu1g2180 639 MobiDBLite consensus disorder prediction 21 36 - -
Ssu1g2180 639 SMART it6_source 164 593 IPR015425 -
Ssu1g2180 639 PANTHER FORMIN-RELATED 2 635 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu1g2180 639 Gene3D Formin, FH2 domain 184 598 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2180 Ssu-Chr1 62082207 62084229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2180 136 637 FH2 protein (formin) Gene Family AT1G70140 47.024 5.48e-151 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2180 - - gmx:100819989 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2180 1 62082207 62084229 Ssu1g2180 1 62082207 62084229 ECH