Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2173 ATGCATCTCCCCTctgccgccgccgccgccgacTCCGGCGAGATCATGCTGTTCGGGGTGAGAGTCGTGGTGGACTCCATGAGGAAGAGCGTGAGCATGAACAACCTCTCGCAGTACGAGCTCCCTCGCGACGCCGCCAACGCCAAAGACGACGCTGTCGCCGCTGGCTACGCGTCCGCCGACGACGCCGCTCCGATCAACTCAGGCAAGAACCGCGAGCGCGAGCGCAAGCGAGGGATTCCATGGACGGAGGAAGAGCACAAGCTATTCTTGGTGGGGTTGCAGAAGGTGGGGAAAGGTGATTGGAGAGGGATCTCAAGGAACTACGTCAAAACGCGGACGCCAACTCAGGTTGCTAGTCATGCTCAGAAGTACTTTCTCCGCCGCAGCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGATTCGGTGATCCCTCCATCGTGTTTTTGA 468 0.5598 MHLPSAAAAADSGEIMLFGVRVVVDSMRKSVSMNNLSQYELPRDAANAKDDAVAAGYASADDAAPINSGKNRERERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVIPPSCF 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2173 155 ProSiteProfiles Myb-like domain profile. 74 126 IPR001005 -
Ssu1g2173 155 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 77 128 IPR006447 GO:0003677
Ssu1g2173 155 SUPERFAMILY Homeodomain-like 76 131 IPR009057 -
Ssu1g2173 155 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 130 IPR017930 -
Ssu1g2173 155 Gene3D - 80 132 - -
Ssu1g2173 155 ProSiteProfiles SANT domain profile. 82 130 IPR017884 -
Ssu1g2173 155 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 11 150 - -
Ssu1g2173 155 MobiDBLite consensus disorder prediction 59 80 - -
Ssu1g2173 155 CDD SANT 81 126 IPR001005 -
Ssu1g2173 155 PANTHER F25A4.19 PROTEIN 11 150 - -
Ssu1g2173 155 Pfam Myb-like DNA-binding domain 81 126 IPR001005 -
Ssu1g2173 155 SMART sant 78 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2173 Ssu-Chr1 61935039 61936157 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g2173 Myb_DNA-binding 5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2173 - - gmx:778057 224.557