Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2169 ATGGATCCTCCTCTCATCAGCGACTCCACATTCTCCCCCGCTTACGCTCTCGCCGAGATTTGGCCCGGAATGGCCCATTTGGCCCATTCTAACATGCCTCCCTTCCCCCACGCCTCCGCCGACGAGTCCACCGTCACCGACCACAGCGGCGCCACGTGGAAGAGGAAGGACGCAGCCGCCTCCGAGGACGAGTGCTCCAAGGTGGtctcctccaccaccactgccaaCCAATCTAATAATGATTCTGGTAGCAATAAACGGATGAAGTTGGGAGGGTCCAGCGTCGAGAGTGATGGTTTGAAAGCTGAGGCAGAAGCAAGTTCAGCCGGTGGTAACAAGTCCGGTGAACAAAGCACTAAACCTTGTGAGGCACCTAAGCAAGACTATATTCAAGTGAGGGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTCTAGCAGAGAGAgcaagaagagaaaagatcaGTGACAGGATGAAAATTCTTCAGGATTTGGTGCCAGGGTGTAACAAGGTAATTGGTAAAGCACTTGTCCTAGATGAGATAATCAATTACATCCAGTCGCTGCAGCGTCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAACATGAACCCTACTATTGATGGGTTTCCTTCTAAAGATGTTGGTACCCAGCCATTTGACATTTCTGGAATGATATTTGGATCACAAGCAGCAAGGGGGTATGCTCAGGGATCACATCCTGGATGGCTGCATATGCACAGATAG 762 0.4764 MDPPLISDSTFSPAYALAEIWPGMAHLAHSNMPPFPHASADESTVTDHSGATWKRKDAAASEDECSKVVSSTTTANQSNNDSGSNKRMKLGGSSVESDGLKAEAEASSAGGNKSGEQSTKPCEAPKQDYIQVRARRGQATDSHSLAERARREKISDRMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMNPTIDGFPSKDVGTQPFDISGMIFGSQAARGYAQGSHPGWLHMHR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2169 253 MobiDBLite consensus disorder prediction 48 63 - -
Ssu1g2169 253 CDD bHLH_AtBPE_like 128 213 - -
Ssu1g2169 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 208 IPR036638 GO:0046983
Ssu1g2169 253 MobiDBLite consensus disorder prediction 35 125 - -
Ssu1g2169 253 Gene3D - 135 212 IPR036638 GO:0046983
Ssu1g2169 253 MobiDBLite consensus disorder prediction 65 91 - -
Ssu1g2169 253 Pfam Helix-loop-helix DNA-binding domain 142 189 IPR011598 GO:0046983
Ssu1g2169 253 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 252 IPR024097 GO:0006355
Ssu1g2169 253 SMART finulus 144 194 IPR011598 GO:0046983
Ssu1g2169 253 Coils Coil 185 205 - -
Ssu1g2169 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 188 IPR011598 GO:0046983
Ssu1g2169 253 PANTHER BNAC05G07950D PROTEIN 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2169 Ssu-Chr1 61812127 61815746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2169 1 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 52.347 1.23e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g2169 HLH 9.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2169 - - gmx:100777819 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2169 1 61812127 61815746 Ssu6g1313 6 21465055 21468049 ECH
Ssu1g2169 1 61812127 61815746 Ssu1g2169 1 61812127 61815746 ECH