Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2167 ATGGTGAGGTCTCCTTGTGAAAAAATCAATGTCAAAAGGGGTGTATGGACTACAGAAGAAAATACGAAGAAGCTTGCATTTGGCTCCAAGCACGGATCTGGGCTCAAGAGGTGTGGAAAGAGTTGTAGGCTTAGGTGGACTAACTGCTTCAGGCCTGATCTTAAGCACGATAATTTCACAATCCAAGAAGAAGATCTAATCATTAAACTTCACGCAGCCATAGGCAGCAGGTGGTCTATAATAGCCCAACAACTTCCTGGGAGAACAGACAATGATGTAAAGAACTACTGGAACGCAAAGCTGAAAAAGAAGCTCTCTCAAATGGGGATTGACCCTGTTACCCACAAGCCCTTCTCTAAACTCATTGCTGACTATGGAAACATTGGGGATTGCAAGAAACCAAGTACCCGAATTGGGTCTATCAATAAAGACTTCAAGAATGCCATGATGTTAAAACCAGAGCCCCATCAAACCCTGCCCCAACGATTTACAAACATCAATGACCAACCAAACCTACCACCAACATCCCCCCCCAAAATGGAAACAACTggaaataactttttgtttaatagAAGTCATCATAGTGATAACCACTCAATGAATCTTGCCCAGTTCCAAGCCATACCAATGGTTTCAGATGCCTCAAATTGCATAGACTTTGAGAATGAGACCATCCCAGCATGTGTGTTTGGGGAAGACTGTTTGTCAAAAACTTCATCACCATCTACTCCTTCTACTTGTTCCACTTCAGCTTTTAGTTGGAATGACTTCCTTCTAGAAGATGCTTTTACTCCACCTGCTGATAACCAAGAACAAGACATCGTGGTCTCAAAGGACTTGGTGAGCCAAATAGAGAATGTGACCAGACAAAGTTGGAACAAGAAAGAGGTCAAGTCACAGCAAGCCTCAAGTAGTGACTTCCAATTTTCACCATCCTCTGACATTTCGTTCATAGAAGCCATGCTTGATCAAGAAAATGAGATGTTTCTAAGTTTTCCTCACCTTATGGAGGAACCGTCCAATTTTAGTTAa 1032 0.4167 MVRSPCEKINVKRGVWTTEENTKKLAFGSKHGSGLKRCGKSCRLRWTNCFRPDLKHDNFTIQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKNYWNAKLKKKLSQMGIDPVTHKPFSKLIADYGNIGDCKKPSTRIGSINKDFKNAMMLKPEPHQTLPQRFTNINDQPNLPPTSPPKMETTGNNFLFNRSHHSDNHSMNLAQFQAIPMVSDASNCIDFENETIPACVFGEDCLSKTSSPSTPSTCSTSAFSWNDFLLEDAFTPPADNQEQDIVVSKDLVSQIENVTRQSWNKKEVKSQQASSSDFQFSPSSDISFIEAMLDQENEMFLSFPHLMEEPSNFS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2167 343 PANTHER F14D16.11-RELATED 1 340 - -
Ssu1g2167 343 CDD SANT 58 98 IPR001005 -
Ssu1g2167 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Ssu1g2167 343 Gene3D - 58 117 - -
Ssu1g2167 343 SMART sant 12 52 IPR001005 -
Ssu1g2167 343 SMART sant 55 103 IPR001005 -
Ssu1g2167 343 SUPERFAMILY Homeodomain-like 36 109 IPR009057 -
Ssu1g2167 343 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Ssu1g2167 343 Pfam Myb-like DNA-binding domain 58 98 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2167 Ssu-Chr1 61761746 61763300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2167 1 338 MYB Transcription Factor Family AT3G28470 37.960 8.20e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g2167 Myb_DNA-binding 4.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2167 K09422 - gmx:100795381 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2167 1 61761746 61763300 Ssu1g2167 1 61761746 61763300 ECH