Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2165 aTGTCCCAAGGATCTCCCCCTCCCCCGCAAGACACCACCGAACCCTCGCCGGAACCCAATTCGCACAAGGAGGAAGCCACCGCCGCCGCCGCAGCCGCAGCCGCTACCACAACCACCGTCACCGCCACCAACGCCGCCGATGTCGCTCCTCCCGCCCCCACCCGGAACCGCCCCTCCCGCGCCTGCACCATTCGCGCCGCTGCACGCCTCTACACGGCGTCGCAGCCGGCGAGGCAGAAGGCCGCGAAGAAGGAGCCTCGCCGCGAGGAGTCCACGGCGCCGCCAGCGCCGCAATGCAGCAAGATCGTAACGCCGCTGGTGGAACCGCCCCCACCAGCGCAGTTGCCGCGCTACAACCTCCGGTCCATGTGGGAATTGGCTTCAATACTCAATTTTTTGCATcTGTTTAGGCCTCTTTTGAATATATCAGTAGAATTCTCGGCTGAAGAGTTTGAGACGGCTTTGCTTACCCCCAATGACACATTGGGTGATATACACATGCCTTTGCTAAAGGCAATTCCTCCCATTACCCGAATGGCACTCTCACGTGATACTTGGATTACTGTATTATGCAGAAAGTTGAGAGATTGGTGGCACTGGGTTGCTGAAGGGGATCTTCCTATTGTTGCTTCACATGGGGTGGAGGTTGAAGTATATAAATCACTTGATCCAGGGTTCCGTGTAATCATCTTAAAAGCATTATGTGACATTCGTGTTGAGCAAGAAGATATCAGAGGTTACATTGACAGCTCAATCAAACACGGCGTTCAACTTTCGACATTCCGTAAGGAGCGTATTGGTGGTGATTCACATGGAGTTTATTATTGGTATGAAGATGACCCAATTATTGGTCATAGGTTGTATCGGGAAATAAGGAAAACTGAGGTGGTTCAAATGAAGAAAGGGAAACCAAGAGGTTCCCAGGTTCTTTCTAATACAACATACCAGTGGGAAACAGTTGCTACcaattttgatgaatttcaGGATGTTTCTGAGAAGCTTTTCTCAAGTAAAAACAGAACGGAGGCTTCTGTAGGGAAGAAGGTGAAGATAGACATGCTCCCTGAAATTGAGAAAGTTCACAAGAGAAAGGAGAGGTTGCTGAAAAAACAACACAGACAAGCTCTTCTTCTCGATAATTTCTTGGGTGTTGATGGGCTTGCCCCAGGGCGTTCACTCCGTGATAGGAAACCTGTTACTTACACTTTTGATGATTATGATCGGTCCATCAATGAGGCAATTAAGATAACCAAACGGAAACCACCATCCCCAGAACCTATACCCAGGAGAGAAGCAGGAGCAAAACCTGAAGCTTTAACTAATGGTAAATGGAGTGGTCCTTCACATGACACtcaaaatctaaattttggCATGCCATCTCCAAAATCACTTGAGTTCGATGATATGGAGGAAGAGAATCAAATTGACATGTTGGACTTGGATCGAAGCAATCGGCGAAGACAGAGGCCTAAACGGTATTCAGAGAAAGATTTTGTTGAAGCTGTGTCAGATAATGAGGCTGACTATGACAGTGATGATGATATTGTTGGAGAAGCTGTATATGATGAAGAGTATCTCCGGAAACGTAAGCAGAGAAGGCAGGCTTCGAGTAGCTCTGGCTCTGAAGGAGATGAAGAATATCATTGGGATGAAGATAACGttgaagatgatgaagaagatgacGAAGAAGATTCCTTGAGTGTCAGTGAGGATAGTGACAAGCCCCGTAAATTCAAGCGACTGCCAGGCCGTACTAGGAGGGAAACTAAACTCAGGTCTGTGGGTGAGATTCAATCAGGTCTAAGACGCAGTAAGAGGGCAACAAGAAACCGTATAAATTACCGACAGTATGAGATGTCTGATTCAGAAACAGAGTTTATTAAACCTGACAAGTCTAATGCATCAGATGATCACTCAGATCCTACTGAGAATGGGGAATATATGATGGAAAGTGAAGATTCAGATGGAAATGACGATGAAGATCAAGAAACCAAAGTAGTTGAGCCTGTTACTTATCCTGCAGAAGAAAACAACCAATATCCTGCTGTAGGGGAGAataaacaaaaccaaaaccagCCTCCTGAAAAATCTAGTCCAGGTCAGGAAGAAGTTGAGGGCACCGCAAAGCGACGTTTCCTTGATTTAAATGAGCTTGCCCCTAGCTCAGGTTTTGATGATGGTCcaaatacaacaacaaaagaTGAAGGCAATGATGATTACTGA 2223 0.4543 MSQGSPPPPQDTTEPSPEPNSHKEEATAAAAAAAATTTTVTATNAADVAPPAPTRNRPSRACTIRAAARLYTASQPARQKAAKKEPRREESTAPPAPQCSKIVTPLVEPPPPAQLPRYNLRSMWELASILNFLHLFRPLLNISVEFSAEEFETALLTPNDTLGDIHMPLLKAIPPITRMALSRDTWITVLCRKLRDWWHWVAEGDLPIVASHGVEVEVYKSLDPGFRVIILKALCDIRVEQEDIRGYIDSSIKHGVQLSTFRKERIGGDSHGVYYWYEDDPIIGHRLYREIRKTEVVQMKKGKPRGSQVLSNTTYQWETVATNFDEFQDVSEKLFSSKNRTEASVGKKVKIDMLPEIEKVHKRKERLLKKQHRQALLLDNFLGVDGLAPGRSLRDRKPVTYTFDDYDRSINEAIKITKRKPPSPEPIPRREAGAKPEALTNGKWSGPSHDTQNLNFGMPSPKSLEFDDMEEENQIDMLDLDRSNRRRQRPKRYSEKDFVEAVSDNEADYDSDDDIVGEAVYDEEYLRKRKQRRQASSSSGSEGDEEYHWDEDNVEDDEEDDEEDSLSVSEDSDKPRKFKRLPGRTRRETKLRSVGEIQSGLRRSKRATRNRINYRQYEMSDSETEFIKPDKSNASDDHSDPTENGEYMMESEDSDGNDDEDQETKVVEPVTYPAEENNQYPAVGENKQNQNQPPEKSSPGQEEVEGTAKRRFLDLNELAPSSGFDDGPNTTTKDEGNDDY 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2165 740 MobiDBLite consensus disorder prediction 616 645 - -
Ssu1g2165 740 MobiDBLite consensus disorder prediction 476 498 - -
Ssu1g2165 740 MobiDBLite consensus disorder prediction 681 698 - -
Ssu1g2165 740 MobiDBLite consensus disorder prediction 444 459 - -
Ssu1g2165 740 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 31 739 - -
Ssu1g2165 740 PANTHER REMODELING AND SPACING FACTOR 1 31 739 IPR028938 GO:0006355|GO:0031213
Ssu1g2165 740 MobiDBLite consensus disorder prediction 1 15 - -
Ssu1g2165 740 MobiDBLite consensus disorder prediction 545 568 - -
Ssu1g2165 740 MobiDBLite consensus disorder prediction 413 498 - -
Ssu1g2165 740 Pfam DDT domain 128 173 IPR018501 -
Ssu1g2165 740 MobiDBLite consensus disorder prediction 1 110 - -
Ssu1g2165 740 MobiDBLite consensus disorder prediction 413 432 - -
Ssu1g2165 740 MobiDBLite consensus disorder prediction 524 740 - -
Ssu1g2165 740 MobiDBLite consensus disorder prediction 646 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2165 Ssu-Chr1 61622937 61631941 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Ssu1g2165 DDT 5.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2165 - - gmx:100816258 1220.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2165 1 61622937 61631941 Ssu1g2165 1 61622937 61631941 ECH
Ssu6g1309 6 21391718 21398730 Ssu1g2165 1 61622937 61631941 PCT