Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2159 ATGGAGTTTGCGAACTTGAATTTCTATCTTAACTCAAAGTGGGTATCGACGGTGGCGAGCATATGGATTCAGTGCACCAGTGGGTCACTCTATACTTTCTCCATCTACTCCCAGACTCTGAAGTCAACTCAGCACTACGATCAATCGACGCTCGACATCGTCTCTGTCTCCAAGGACATCGGAACCAACGTCGGCGTCCTCTCTGGCCTCCTCTACGATTTCCTTGCCCGCAGAACACCAACCGGGCCCCGGCTCGTCCACTTCTTGGGCTCGGCCCAATGCTTCTTGGGCTACTTCCTCATGTGGGCCGCCGTCGCCGGCCTCTTTCCGCCGGTGCCCGTGCCCCTCATGTGCCTCTTCATGTTCGTGGCAGCTCATGGGCAGAGCTTCTTTAATACTTCCAACGTTGTCACCGGCGTCCACAATTTCCCTAACAATAGCGGAACCATCGTCGGCATTATgaagGGATTTCTTGGTCTCAGTGGAGCAATATTAATTCAAGTGTACCGAACAATATTCAACAACAAGCCTATGTCATATCTTCTGATGCTAGCATTCTTACCACCTATAAATACTTTGCTGTTTATGTGGTTTGTAAGAATCCACCACACTCATGAGGGGGAAGAAAGGAAGTATCTGAATATATTCTCTTTGATGGCTCTGGTTGTTGCTGCATATCTTATGGTTATTATAATCCTAGAGAACGTCCTTAGTCTGCAATCATTGGTGCGCATCTTTATATTTGTTGTGCTTATGTTGTTGCTAGCCTCACTTCTTTGCATTGCATTTAAAGCACATGAAAAGAGCTCTGGTAGAAGTTCAGAAAGTTTTCTGGATGAGAGGTCACAACTAATTGTGGAGCCAGGCCCCCTTGATTCTGAAAAGGAGGATGCAAGGAAAGATTCTTTGAATAATCAAAGGACTAATTTGCAACTAGGAGAGAACCTGAATCTTTTCCAAGCTGTGCAAACTGTGAACTTTTggattttgtttatttctatgGCTTGTGGTATGGGATCAGGACTTGCAACTGTTAACAACTTGGGCCAAATAGGGGAGTCCCTTAGTTATAGCAGCCACGAGACAGGTTCCTTGGTTTCTTTGTGGAGCATTTGGAATTTTCTTGGCCGCTTCGGAGCCGGTTATGTGTCCGATTATTATTTGCACACAAGAGGATGGGCAAGACCTTTATTTATGGTCATCACTTTAATGATCATGAGCATTGGCCATGTAGTGATTGCTTCTGGACTTCCGGGTGCCCTATATGCTGGTTCAATATTGGTGGGTATTTGTTATGGCTCTCAGTGGTCCCTAATGCCCACAATCACTTCTGAGATATTTGGTGTGGGAAATATGGGCAGCATATTCAACACCATTAGTATAGCAAGTCCAGTGGGATCTTATATATTCTCTGTAAGAgtagttggatatatatatgacaaagaAACATCGGAAGGAAATACATGCATTGGAACtcattgttttatgttttctttttttataatggcATCTGCCACTATTCTGGGTTCTCTGACAGCTTTAGGTTTGTTTTTGCGGACAAAAAACTTCTATGGTCAGGTTATACTCAGAAGAATTCAAAATATTCAGTGA 1611 0.4258 MEFANLNFYLNSKWVSTVASIWIQCTSGSLYTFSIYSQTLKSTQHYDQSTLDIVSVSKDIGTNVGVLSGLLYDFLARRTPTGPRLVHFLGSAQCFLGYFLMWAAVAGLFPPVPVPLMCLFMFVAAHGQSFFNTSNVVTGVHNFPNNSGTIVGIMKGFLGLSGAILIQVYRTIFNNKPMSYLLMLAFLPPINTLLFMWFVRIHHTHEGEERKYLNIFSLMALVVAAYLMVIIILENVLSLQSLVRIFIFVVLMLLLASLLCIAFKAHEKSSGRSSESFLDERSQLIVEPGPLDSEKEDARKDSLNNQRTNLQLGENLNLFQAVQTVNFWILFISMACGMGSGLATVNNLGQIGESLSYSSHETGSLVSLWSIWNFLGRFGAGYVSDYYLHTRGWARPLFMVITLMIMSIGHVVIASGLPGALYAGSILVGICYGSQWSLMPTITSEIFGVGNMGSIFNTISIASPVGSYIFSVRVVGYIYDKETSEGNTCIGTHCFMFSFFIMASATILGSLTALGLFLRTKNFYGQVILRRIQNIQ 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2159 536 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 534 - -
Ssu1g2159 536 Gene3D MFS general substrate transporter like domains 208 513 IPR036259 -
Ssu1g2159 536 SUPERFAMILY MFS general substrate transporter 17 202 IPR036259 -
Ssu1g2159 536 CDD MFS_Mch1p_like 12 509 - -
Ssu1g2159 536 Pfam Nodulin-like 13 262 IPR010658 -
Ssu1g2159 536 Pfam Major Facilitator Superfamily 330 519 IPR011701 GO:0022857|GO:0055085
Ssu1g2159 536 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 9 534 - -
Ssu1g2159 536 SUPERFAMILY MFS general substrate transporter 214 522 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2159 Ssu-Chr1 61469162 61472467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2159 10 534 Nodulin-like Gene Family AT1G74780 56.157 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2159 - - gmx:100814668 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2159 1 61469162 61472467 Ssu1g2159 1 61469162 61472467 ECH