Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2158 ATGGGGTGGGTGGCGAATCGGTGGACGGGCGTCGCCGCCGCCATATGGATCCAGTGGAGCTGCGGTGCATCCTACACCTTCAGCATCTACTCCTCTGTGCTCAAGTCCACGCAGGGCTACGATCAATCCACCCTCGACACCGTCTCTGTCTTCAAGGACATTGGCGCCAACTTCGGCGTCCTCTCCGGCCTCCTCTATTCCGCCGTTGTCCCTTACACCGCCGCCGTCCCCAGCTCGCCGTCGAAATCCAAATGGACCTCGCTCGGGGGGCCCTGGGTCGTCGTCGCGGCCGGCGCGGTTCAGTGCTTCGCGGGCTTCATCTTCATCTGGGCCTCCGTCGTAGGCCTCATAAGCCCACCGCCCGTGCCGGTTATGTGTTTCTTCTCGTGGCTCGCGTCCAACGGTCAAACCTTCTTAAACACAACTAATGTCGTTACGGGCTTGCGCAATTTCCCCGGGTATAGCGGCACCATCATTGGTATCATGAAgGGCTTTCTTGGGCTGAGTGGAGCTATCTTGATCCAAATCTACCATACGTTTTTTGATGGGGATCCAGCAACGTACCTTTTGATGCTTGCTTTGTTGCCTGCATTCATCTGCGTGTTGCTTATGTTCTTGCTGAGGATTTATGAAGTGCATGGCAGTGATTCCAAGAAGCAGTTGGATGGTTTCTCTGTGGTTACTGTGATTATTGTTGCCTATCTCAtgttcataataattttacagaACGTGGTTAGTTTGCCATATTGGGGACGGGTGTTTGCGTTTGTGATCCTTATGGTTCTGCTAGCATCACCTTTTGGAATTGCCATCAAGGCCCATTGGGAGGAGTCGCGGATGTTTGCAATATCCTACACCATTGAGAGGGGTTCTTCTACAAATAAGGGTGCTACTTCCTCCAGTTATTCTGCATCAGAGGATCAAGTGGAGTACCATGAGTTGCCTAGTGATGAGGGGCAGGTACAAGTGACTTCAGATGACAAGTTGCccgatgaagaagaaaaaaacctCTTGCAAGCTATGCGCACGGTTGATTTTTGGATGTTGTTTGTGACAATGATATCGGGGTTGGGGTCCGGGCTTGCAACTATAAATAATATGAGCCAAATAGGACAATCCCTTGGCTATAGTACCATTGAGATTAATAATTTGGTGTCACTGTGGAGTATGTGGAACTTCCTTGGTCGATTTGGAGGGGGCCATTTATCGGATTATATCATGCACAGAAAAGGTTGGCCGAGGCCCCTGTTGATGACTGCAACTCTGGGGATAATGATTCTTGGCCATTTAACTATAGCATCTGGTTTCCGTGGAAATTTGTATTTGGGTCCTGTCCTGGTGGGCATCTGCTATGGTGCACATTGGTCCTTGATGCCAACAATCACTTCTGAGATATTTGGTGTCAAGCATATGGGTACCATTTTCAATGCTATTGCTGCAGCAAGTCCACTTGGATCTTATATACTTTCTGTGAGAATTGTCGGATATATTTATGACAAGCAAGCCGATAAAGAAGATAATTCGTGCTTTGGCATCGACTGTTTCATGTCGTCGTTTTTTATCCTGGCAGGAGTGGCTTTTCTTGCATTTTTGGTTGGTTTGGCATTATACTTTCGGACCCGAAGGTTCTATAAGCAAGTTGTGCTTAGAAGATTAAAACATTATGCAAGATGA 1674 0.4743 MGWVANRWTGVAAAIWIQWSCGASYTFSIYSSVLKSTQGYDQSTLDTVSVFKDIGANFGVLSGLLYSAVVPYTAAVPSSPSKSKWTSLGGPWVVVAAGAVQCFAGFIFIWASVVGLISPPPVPVMCFFSWLASNGQTFLNTTNVVTGLRNFPGYSGTIIGIMKGFLGLSGAILIQIYHTFFDGDPATYLLMLALLPAFICVLLMFLLRIYEVHGSDSKKQLDGFSVVTVIIVAYLMFIIILQNVVSLPYWGRVFAFVILMVLLASPFGIAIKAHWEESRMFAISYTIERGSSTNKGATSSSYSASEDQVEYHELPSDEGQVQVTSDDKLPDEEEKNLLQAMRTVDFWMLFVTMISGLGSGLATINNMSQIGQSLGYSTIEINNLVSLWSMWNFLGRFGGGHLSDYIMHRKGWPRPLLMTATLGIMILGHLTIASGFRGNLYLGPVLVGICYGAHWSLMPTITSEIFGVKHMGTIFNAIAAASPLGSYILSVRIVGYIYDKQADKEDNSCFGIDCFMSSFFILAGVAFLAFLVGLALYFRTRRFYKQVVLRRLKHYAR 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2158 557 SUPERFAMILY MFS general substrate transporter 236 542 IPR036259 -
Ssu1g2158 557 CDD MFS_Mch1p_like 7 529 - -
Ssu1g2158 557 Pfam Major Facilitator Superfamily 349 542 IPR011701 GO:0022857|GO:0055085
Ssu1g2158 557 Pfam Nodulin-like 91 270 IPR010658 -
Ssu1g2158 557 Pfam Nodulin-like 7 69 IPR010658 -
Ssu1g2158 557 Gene3D MFS general substrate transporter like domains 333 554 IPR036259 -
Ssu1g2158 557 SUPERFAMILY MFS general substrate transporter 6 209 IPR036259 -
Ssu1g2158 557 PANTHER F25A4.25 PROTEIN 5 555 - -
Ssu1g2158 557 ProSiteProfiles Major facilitator superfamily (MFS) profile. 344 557 IPR020846 GO:0022857
Ssu1g2158 557 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 5 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2158 Ssu-Chr1 61449428 61451509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2158 1 554 Nodulin-like Gene Family AT1G74780 55.235 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2158 - - gmx:100799596 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2158 1 61449428 61451509 Ssu1g2158 1 61449428 61451509 ECH