Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2156 ATGGGAAACTGCAACGCGTGCGCGAAAGCCGATGTGGTGGAAGACAACAAGagcaacaacaagaagaagaacaacaaGAAGTCGAACGACACGAACCGCGGTCGGAAGAAGGAACCGAACCACAGAAAGCCGAACCCGGACGAGCCGGCCCGGTCGGCGGCCCCGATCCGGGTTCTGAAGGACGTGATTCCAATGAGCCACCGGACCCGCATAAGCGACAAGTACGTGCTGGGCCGGGAACTGGGCCGGGGCGAGTTCGGGATCACGTACCTGTGCACGGACCGCGAGACGAAGGAGGCGCTGGCGTGCAAGTCGATCTCGAAGCGGAAGCTGCGGACGGCGGTGGACGTCGAGGACGTGAGGCGCGAGGTGGCCATCATGTCGACGCTGCCGGAGCACCCCAACGTCGTGAAGCTGAAGGCGACCTACGAGGACAACGAGAACGTGCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGGATTGTCGCCCGGGGACACTACAGCGAGCGCGCCGCCGCCGCCGTGGCGCGCACCATCGCCGAGGTCGTCCGGATGTGCCACGCCAATGGCGTCATGCACAGGGACCTCAAGCCCGAGAACTTCCTCTTCGCCAACAAGAAAGAGAATTCCCCTCTCAAGGCCATCGACTTTGGCCTCTCCGTCTTCTTCAAGCCAGGGGAGAGGTTTTCGGAGATTGTGGGGAGTCCTTACTACATGGCGCCGGAGGTTTTGAAGCGGAGTTACGGGCCGGAGGTTGATGTGTGGAGTGCCGGGGtgattctttatattttgttgtgTGGCGTGCCTCCGTTTTGGGCAGAGACGGAGCAAGGTGTGGCTTTGGCGATCTTGAGAGGCGTGATCGACTTCAAGAGGGAACCCTGGCCGCAAATATCGGAGAGTGCTAAGAATCTTGTGCGGCGAATGTTGGAGCCGGACCCTAAAAAGCGCTTGACGGCTGAACAGGTGCTTGAACATCCCTGGCTGCAAAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTGAGGTCAAGGCTTAGGCAGTTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGGTAATTGCAGAGCATTTATCTGTCGAAGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAAAGATGGCAGAGTAACTTATGAGGAACTAAAGGCTGGGTTGAGGAGGGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTTGATTATGGAGAGTTTGTAGCTGTTACAATTCACTTGCAAAAAATGGAGAATGATGAGCATTTCCACAAAGCATTCAAGTTTTTTGACAAAGATGGCAGCGGGTATATTGAGTTAGGCGAGCTACAGGAAGCATTAGCGGATGAGTCAGGAGAAACTGATGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAGGATGGTCGCATCAGTTATGAGGAGTTTGTAGCCATGATGAAAACTGGAACTGACTGGAGAAAAGCATCTAGGCAATATTCAAGGGAGAGATTCAAGAGTTTGAGCCTAAATTTAATGAAGGATGGCTCGCTTCAGCTTCATGATGGAATTACTGGTCAAGCTGTGGTGGTTTGA 1674 0.5173 MGNCNACAKADVVEDNKSNNKKKNNKKSNDTNRGRKKEPNHRKPNPDEPARSAAPIRVLKDVIPMSHRTRISDKYVLGRELGRGEFGITYLCTDRETKEALACKSISKRKLRTAVDVEDVRREVAIMSTLPEHPNVVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAAAVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRSYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISESAKNLVRRMLEPDPKKRLTAEQVLEHPWLQNAKKAPNVPLGDIVRSRLRQFSVMNRFKKKALRVIAEHLSVEEVEIIKDMFTLMDTDKDGRVTYEELKAGLRRVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHFHKAFKFFDKDGSGYIELGELQEALADESGETDADVLNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDGITGQAVVV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2156 557 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Ssu1g2156 557 PANTHER BNAA09G44420D PROTEIN 23 533 - -
Ssu1g2156 557 Gene3D - 342 517 - -
Ssu1g2156 557 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Ssu1g2156 557 Gene3D Transferase(Phosphotransferase) domain 1 161 341 - -
Ssu1g2156 557 SUPERFAMILY EF-hand 361 540 IPR011992 -
Ssu1g2156 557 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Ssu1g2156 557 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 533 - -
Ssu1g2156 557 SMART efh_1 452 480 IPR002048 GO:0005509
Ssu1g2156 557 SMART efh_1 416 444 IPR002048 GO:0005509
Ssu1g2156 557 SMART efh_1 380 408 IPR002048 GO:0005509
Ssu1g2156 557 SMART efh_1 488 516 IPR002048 GO:0005509
Ssu1g2156 557 ProSiteProfiles Protein kinase domain profile. 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2156 557 MobiDBLite consensus disorder prediction 1 55 - -
Ssu1g2156 557 Pfam Protein kinase domain 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2156 557 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Ssu1g2156 557 MobiDBLite consensus disorder prediction 14 48 - -
Ssu1g2156 557 CDD STKc_CAMK 74 332 - -
Ssu1g2156 557 Pfam EF-hand domain pair 451 514 IPR002048 GO:0005509
Ssu1g2156 557 Pfam EF-hand domain pair 381 440 IPR002048 GO:0005509
Ssu1g2156 557 ProSiteProfiles EF-hand calcium-binding domain profile. 484 519 IPR002048 GO:0005509
Ssu1g2156 557 SMART serkin_6 75 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2156 557 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Ssu1g2156 557 CDD EFh 452 514 IPR002048 GO:0005509
Ssu1g2156 557 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Ssu1g2156 557 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Ssu1g2156 557 SUPERFAMILY Protein kinase-like (PK-like) 57 358 IPR011009 -
Ssu1g2156 557 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Ssu1g2156 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Ssu1g2156 557 Gene3D Phosphorylase Kinase; domain 1 76 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2156 Ssu-Chr1 61405639 61409823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2156 1 557 EF-hand Containing Proteins AT1G74740 80.357 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu1g2156 Pkinase 1.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2156 K13412 - gmx:100809838 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2156 1 61405639 61409823 Ssu1g2156 1 61405639 61409823 ECH