Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2155 ATGGATTACTACAACATACTGAAAGTGAACCGCAACGCGAGCGACGAGGATTTGAAGAAAGCGTACAAGCGACTCGCGCGCATATGGCACCCCGACAAGAACCCCGTGAACAAGAGTGAGGCCGAGGCGAAATTCAAGCGAATCTCCGAAGCCTACGACGTTCTGAGCGACCCGCAGAAGCGCCAGATCTACGATCTCTACGGCGAGGAGGCTCTCAAATCGGGGCAGTTCCCGCCGCCGCCGCagtcctcctcctcctcctcctcctcgtcGGCGCGCGCCTTCCACCACAGCCACCAGCGCCCGAACCAGCCTCCCGCGTCGTTCCGCTTCAACCCGCGCGACGCCGACGACATCTACGCCGAGTTATTCGGCCCCGACGTCGGCGGAGGGGCCTCTTCCCGCCGCGACGGGTTCTTCCGGACCTCCAACGGCGCCGGGTTTGGAGGCGGCGCCGCGAGGAAGGCCGCCGCGGTGGAGAACGCGCTTCCGTGCAGCTTGGAGGACCTCTACAAAGGCGtcaagaagaagatgaagatctCCAGGAACGTCTACGATGCGTTTGGCAAATCTCGGAATGTGGAGGAGATTTTGACTATCGAGATAAAACCTGGCTGGAAGAAAGGAACAAAGGTTACCTTCCCAGAGAAGGGTAACCAGGAGCCTGGTGTCATCCCAGCAGATCTTATTTTTGTGATAGATGAGAAACCACATGCTCTCTATAGAAGGGATGGTAATGATTTGGTGATCAACCAGGAGATAACCCTTCTTGAGGCCCTTACTGGTAAAACATTGGATCTCACCACGTTGGATGGAAGGAGTCTCATGATCCCATTGACAGATATTGTCAAACCTGGTGCTGAGGTTGTTGTCCCTAATGAAGGAATGCCTATATCAAAAGAGCCTGGGAGGAAGGGGAATTTGAGAATTAAGCTTGACGTCAAGTATCCTTCAAGGTTAACTGCAGAGCAGAAGTCTGATCTGAGGAGAGTTTTAGGTGGAATCTCATAA 1011 0.5203 MDYYNILKVNRNASDEDLKKAYKRLARIWHPDKNPVNKSEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPPQSSSSSSSSSARAFHHSHQRPNQPPASFRFNPRDADDIYAELFGPDVGGGASSRRDGFFRTSNGAGFGGGAARKAAAVENALPCSLEDLYKGVKKKMKISRNVYDAFGKSRNVEEILTIEIKPGWKKGTKVTFPEKGNQEPGVIPADLIFVIDEKPHALYRRDGNDLVINQEITLLEALTGKTLDLTTLDGRSLMIPLTDIVKPGAEVVVPNEGMPISKEPGRKGNLRIKLDVKYPSRLTAEQKSDLRRVLGGIS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2155 336 PRINTS DnaJ domain signature 40 60 IPR001623 -
Ssu1g2155 336 PRINTS DnaJ domain signature 4 22 IPR001623 -
Ssu1g2155 336 PRINTS DnaJ domain signature 22 37 IPR001623 -
Ssu1g2155 336 PRINTS DnaJ domain signature 60 79 IPR001623 -
Ssu1g2155 336 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 335 - -
Ssu1g2155 336 Pfam DnaJ domain 2 65 IPR001623 -
Ssu1g2155 336 SUPERFAMILY Chaperone J-domain 1 82 IPR036869 -
Ssu1g2155 336 Gene3D - 238 318 - -
Ssu1g2155 336 PANTHER BNAA06G20720D PROTEIN 1 335 - -
Ssu1g2155 336 MobiDBLite consensus disorder prediction 72 110 - -
Ssu1g2155 336 Gene3D DnaJ domain 1 136 IPR036869 -
Ssu1g2155 336 CDD DnaJ_C 163 320 - -
Ssu1g2155 336 Pfam DnaJ C terminal domain 160 317 IPR002939 -
Ssu1g2155 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 241 326 IPR008971 GO:0006457|GO:0051082
Ssu1g2155 336 MobiDBLite consensus disorder prediction 77 107 - -
Ssu1g2155 336 CDD DnaJ 2 57 IPR001623 -
Ssu1g2155 336 ProSitePatterns Nt-dnaJ domain signature. 45 64 IPR018253 -
Ssu1g2155 336 Gene3D - 157 236 - -
Ssu1g2155 336 ProSiteProfiles dnaJ domain profile. 2 68 IPR001623 -
Ssu1g2155 336 SMART dnaj_3 1 60 IPR001623 -
Ssu1g2155 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 238 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2155 Ssu-Chr1 61395273 61400557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2155 3 72 C2H2 Transcription Factor Family AT1G74250 35.135 3.22e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2155 K09510 - gmx:100781572 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2155 1 61395273 61400557 Ssu1g2155 1 61395273 61400557 ECH