Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2153 ATGTTGTCATCACAACACCACCAACTGGGATCATCATCACCACTGTTGACACTTTCTCAGAGTGAGAGAGTGCAGCCGGTGACTGATTCCACTTCCACCCAAATAAGTTGTGAGCAAAAAGAGTCCATTTTGAAGGCTGCAATGGAAATGGGTCATGTAGTGTGGATGTTGGTGGCGATTTCCACCGCTGTTTTATGCCCTTCTTCTCTTGCACTCACACGAGACGGATTGACATTGTTGGAGATCAAAAGCACTTTGAATGACACAAGGAATTTTCTGGGCAACTGGCGAGAGTCTGATAAGTCTCACTGTACATGGACTGGTGTCACTTGTCACCCTGGCGAACAGCGAGTTCGCTCAATAAATTTACCTTACATGCAACTGGGGGGAATTATTTCTCCCAGCATTGGCAAACTCAGTAGATTGCACAGACTGGCACTTCATCAAAATGGCTTACATGGAGTTATTCCCAATGAAATTAGCAATTGTACTGAGCTTAGAGCACTGTACTTGAGAGCTAATTATTTACAAGGAGGCATCCCATCGGATATTGGAAATCTTTCTTATTTACATGTAATGGATTTATCAAGCAACTCATTGAAGGGTGCTATACCTTCTTCTATTGGCCGTCTTACACGTTTGCGAGTTCTGAACTTGTCAACTAATTTCTTTACTGGTGAAATCCCTGACATTGGAGTACTAAGCACCTTTGGGAACAATGCGTTTATTGGGAATTTAGATCTTTGTGGGCGACAAGTTCAGAAACCATGTCGAACATCACTTGGTTTCCCAGTGGTGCTACCACACGCTGAAAGTGATGAAGCTGCAGTCCCTGCCAAAAGATCTTCACATTACGTGAAGTGGGTGTTAGTTGGTGCAATATCAATAATGGGCCTTGCACTTGTTGTAACTCTTTCATTACTATGGGTTTGTTTGCTATCAAAGAAGGAAAGAGCTGCTAGGAGATACATAGAAGTTAAGGGTCAAGTCAATCAAGAATCAAGTAGGAAGGATGATgGTACAAAACTTATCACCTTCCATGGTGATCTGCCATACACATCATTTGAGATCATAGAAAAGCTGGAGTCTCTTGATGAAGATGATGTGGTAGGGTCTGGAGGATTTGGTACCGTTTACCGAATggtgatgaatgattgtggtacATTTGCTGTTAAGCGGATTGATAGAAGTCGTGAAGGTTCTGATCAAGGGTTTGAAAGGGAACTAGAAATATTGGGTAGCATCAAGCACATAAATCTAGTTAACCTGCGTGGTTACTGCAGACTCCCTTCTACTAAGCTTCTAATCTATGATTATTTGGCCATGGGAAGCTTAGATGATCTCTTGCATGAAAATACTGAACAATCACTGAATTGGAGTACTCGCCTAAAGATTGCTCTTGGTTCTGCCCGGGGTTTGGCTTACTTGCACCATGACTGCTGCCCAAAAATTGTGCATCGCGACATAAAATCCAGCAACATCCTTCTTGATGAGAACATGGAGCCTCGTGTCTCGGATTTTGGTCTTGCTAAGCTTTTGGTAGATGAAGATGCCCATGTTACAACAGTGGTTGCTGGTACATTTGGTTATCTAGCACCAGAGTATCTACAAAGTGGGAGAGCCACTGAGAAGTCAGATGTGTATAGTTTTGGAGTTCTATTGCTAGAACTGGTAACTGGGAAGAGACCTACAGATCCTTCCTTTGCAAGGAGAGGTCTAAATGTTGTTGGATGGATGAACACCATCCTCAGAGAAAATAAACTGGAAGACGTAGTAGACAAAAGATGCTCTGATGCAGATAGGGAATCTGTGGAAGTAATTCTTGAACTAGCAGCAAGTTGCACTGATGCAAATGTGGATGAACGTCCGTCAATGAACCAAGTACTACAGATACTGGAACAAGAGGTTATGTCTCCTTGCCCAAGTGATTTTTATGAGTCACATTCAGATCACTCTTAA 1959 0.4206 MLSSQHHQLGSSSPLLTLSQSERVQPVTDSTSTQISCEQKESILKAAMEMGHVVWMLVAISTAVLCPSSLALTRDGLTLLEIKSTLNDTRNFLGNWRESDKSHCTWTGVTCHPGEQRVRSINLPYMQLGGIISPSIGKLSRLHRLALHQNGLHGVIPNEISNCTELRALYLRANYLQGGIPSDIGNLSYLHVMDLSSNSLKGAIPSSIGRLTRLRVLNLSTNFFTGEIPDIGVLSTFGNNAFIGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPAKRSSHYVKWVLVGAISIMGLALVVTLSLLWVCLLSKKERAARRYIEVKGQVNQESSRKDDGTKLITFHGDLPYTSFEIIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLAMGSLDDLLHENTEQSLNWSTRLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFARRGLNVVGWMNTILRENKLEDVVDKRCSDADRESVEVILELAASCTDANVDERPSMNQVLQILEQEVMSPCPSDFYESHSDHS 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2153 652 Pfam Protein kinase domain 367 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2153 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Ssu1g2153 652 SUPERFAMILY L domain-like 73 256 - -
Ssu1g2153 652 SUPERFAMILY Protein kinase-like (PK-like) 342 633 IPR011009 -
Ssu1g2153 652 Pfam Leucine rich repeat N-terminal domain 74 111 IPR013210 -
Ssu1g2153 652 ProSiteProfiles Protein kinase domain profile. 364 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2153 652 PANTHER RECEPTOR-LIKE PROTEIN 55 49 651 - -
Ssu1g2153 652 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Ssu1g2153 652 Gene3D Transferase(Phosphotransferase) domain 1 440 641 - -
Ssu1g2153 652 PANTHER LRR RECEPTOR-LIKE KINASE 49 651 - -
Ssu1g2153 652 SMART serkin_6 364 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2153 652 Gene3D Phosphorylase Kinase; domain 1 326 439 - -
Ssu1g2153 652 Gene3D Ribonuclease Inhibitor 73 259 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2153 Ssu-Chr1 61328274 61332845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2153 55 641 Receptor kinase-like Gene Family AT2G35620 49.576 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Ssu1g2153 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2153 - - gmx:100805042 1139.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2153 1 61328274 61332845 Ssu1g2153 1 61328274 61332845 ECH