Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2151 ATGCCGGGTGGGAGTGTCTTTTGCGCTGCTTCCAATTTAACCACTTTGCTTCCCAACCAAACCGCTCCTTCCACCTCTCACCCTcctcttcactctcttttcctttctcccTCTTCCCCTTTCCTCGGTTCAAGATCTATGGTGAGTTTTGGAGATGTTCAAGGGGGGAAGGGGTGCAACGACTCGTTCTTGAGCCCTTACGATGAGAATGGCGATGAGGACGTGGACGAGTACTTTCATCGGCCTGAGAAGAAGCGCAGGCTCTCGCTGGAGCAGGTGCAGTTTCTTGAGAAGAGCTTTGACGAGGAGAACAAGCTCGAACCCGATAGGAAAATTCGGCTAGCCAATGAGCTCGGGTTGCAGCCGCGGCAGGTGGCGGTTTGGTTTCAGAACCGCCGGGCGCGGTGGAAGACGAAGCAGCTGGAGAAGAATTATGATTCCCTGCAGGCTAGCTACAATGATCTCAAGGCCAACTACGATAATCTCCTCAGGGAAAAGGATAACCTGAAAGCTGAGGTGGCGAGGCTCACGGAGGAGGTGCTTGGAAGAGAGAAGCATGAGGGGAACTTAGAACAGGCTGAAACCAACGGGTTGCGGGAGCCACTGCAGAAGTGTTTGATTGATTCAGCTTCGGAGGGTGACGGGTCCATTGGGGCTTGTAAACAGGAAGACATTAGTTCAGCCAAGAGTGACATGTTTGATTCGGAGAGCCCACATTACACTGATGGGGTTCACTCTGCACTCCTTGAGACTGGTGACTCTTCTTATGTGTTTGAACCTGATCAGTCTGATGTGTCTCAGGATGAACAAGATAACCTAAGCAAGACCCTGTTGCCTCCTTACATCTTTCCCAAACTTGAAGATGTTGATTACTCCGACCCGCCTCATAGTTCATGTCATTTTGGAATTCCGGAGGAAGATCAAACCATTTGGTCTTGGTCTTATTGA 948 0.4926 MPGGSVFCAASNLTTLLPNQTAPSTSHPPLHSLFLSPSSPFLGSRSMVSFGDVQGGKGCNDSFLSPYDENGDEDVDEYFHRPEKKRRLSLEQVQFLEKSFDEENKLEPDRKIRLANELGLQPRQVAVWFQNRRARWKTKQLEKNYDSLQASYNDLKANYDNLLREKDNLKAEVARLTEEVLGREKHEGNLEQAETNGLREPLQKCLIDSASEGDGSIGACKQEDISSAKSDMFDSESPHYTDGVHSALLETGDSSYVFEPDQSDVSQDEQDNLSKTLLPPYIFPKLEDVDYSDPPHSSCHFGIPEEDQTIWSWSY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2151 315 Coils Coil 131 179 - -
Ssu1g2151 315 CDD homeodomain 84 140 IPR001356 GO:0003677
Ssu1g2151 315 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Ssu1g2151 315 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Ssu1g2151 315 SMART HOX_1 82 143 IPR001356 GO:0003677
Ssu1g2151 315 Gene3D - 87 133 - -
Ssu1g2151 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 19 312 - -
Ssu1g2151 315 SUPERFAMILY Homeodomain-like 69 141 IPR009057 -
Ssu1g2151 315 Gene3D - 134 183 - -
Ssu1g2151 315 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Ssu1g2151 315 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Ssu1g2151 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 19 312 IPR045224 GO:0003700
Ssu1g2151 315 Pfam Homeobox associated leucine zipper 139 179 IPR003106 GO:0006355|GO:0043565
Ssu1g2151 315 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2151 Ssu-Chr1 61246385 61247849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2151 23 185 Homeobox Transcription Factor Family AT3G01470 49.701 9.40e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu1g2151 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2151 - - gmx:732618 509.605