Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2144 ATGGAGTTTGGTTCGGAAAGATCTGGTCACGAAGTCAAGGACAAGAAGAGAAATGAAGCTAGTGTTGGCGATGAAGATCGTCGTGAACAAGAGATTGTTGTGCAGGAGCCACTCCTGACTACTACCGAAAGATCCACGGTGGAGGCTGGGCCAAATGCATCCCTAACCAAAAAGCAAGAGGCTGATGAACTTGAAAATGCCAAAGCCGAAATGGGTGAAGTGATGGAAGAAAATCAACGACTAAAGATGTGTTTGAACCGAATAATAAATGATTACCGTACCCTGCAAATGCAATTCAACAATATAGTTGAACAAGAGACAAAAGATTCTTCCGATAAAGATGACCATCAAGAAATAATAGAGGAATCAGAACTAGTTTCCCTCAGTCTTGGAAGACTTCCAAGTAATCCAAGAAACACTGAGAAAGATAAAGTCCCTAAACCTTGGAAAGAGGCAGAAGATAAAGAAGGCTTAGCTCTTGGACTGGACTGCAAGTTTGAAACGTCAAAATCTGGAAGCACAACTGAACATTTGCCAAATCAAAGCCCTGATAATAGTGTTGAAGTACCAAAGGAAGAAGCAGCTGGGGAGAGTTGGCCACCTAGCAAGGGAAACAAGACAGCTAGAGACACCGGAGATGATGAAGTTTCCCAACAACATCCTGCAAAGAAAGCAAGAGTTTGTGTGAGAGCAAGATGTGACACCCCAACTTTGAACGATGGATGTCAATGGAGGAAATATGGACAGAAGATTTCAAAGGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACAATTGCACCATCATGTCCAGTAAGAAAGCAGCTACAGCCATGGCAGTCCACCACTTCTGCAGCTGCTTCCATGCTATTATCTGGCTCATCAACCTCACACTCTGGATCGAGACCTTCAACAGCAATGACCACCACTGCTGCGGATCTTCATGGAATGAACTTTTTCCTATCAGATGGTTCCAAACCAAAGCAATACTACCTGTCCCATCCTGCTCTCTCATCTTCACCTTCACACCCTACCATCACTCTTGACCTCACTTCCAATCCATCCTCATCTTCTGCTCCTTTTGTTAAATTCACTTCAAATTCAAACTACAACCCACAAAGGTACCCTCCTTCTACAAGCCTGAACTTCAGTTCCTCCGAATCCAATGCAACCTCTTGGAGCAACGGGATCCTCAGCTACACCACTCAACCATATAATAACAATAGGAATGTCCTTGGCAACATAAACCTTGGAAGACAACAACCAATGGAAAACATCTACAATACCTACATGCAAAGGAACAACAATCCAATCCCTCCACCACAACATTCTCTGCCAGACACCATAGCTGCGGCAACAAAAGTGATCACAGCAGACCCCAATTTTCAGTCAGCTTTGGCAGCAGCACTTACTTCAATTATTGGCTCTGGAAGCACTCAAGGAAATAACCAGGGTGCTGGGGAAAATCTGAATCAGAAAATGAAATGGGGTGAATTGTTTTCATCCTCTTCTGCCTTACCTTCATCTTCAAAAGTCAATGGATGTGCATCAAGCTTCTTGAACAAATCACCCGCTAATTCGCAACCAGGAAGTTTGATGTTTCTTCAGCCACCTATGCCACTTTCTAGCCCCAAAAGCGCTTCTGGTTCTCCCGGAGATAACAGAGACaagaaaaattaa 1680 0.4363 MEFGSERSGHEVKDKKRNEASVGDEDRREQEIVVQEPLLTTTERSTVEAGPNASLTKKQEADELENAKAEMGEVMEENQRLKMCLNRIINDYRTLQMQFNNIVEQETKDSSDKDDHQEIIEESELVSLSLGRLPSNPRNTEKDKVPKPWKEAEDKEGLALGLDCKFETSKSGSTTEHLPNQSPDNSVEVPKEEAAGESWPPSKGNKTARDTGDDEVSQQHPAKKARVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCTIAPSCPVRKQLQPWQSTTSAAASMLLSGSSTSHSGSRPSTAMTTTAADLHGMNFFLSDGSKPKQYYLSHPALSSSPSHPTITLDLTSNPSSSSAPFVKFTSNSNYNPQRYPPSTSLNFSSSESNATSWSNGILSYTTQPYNNNRNVLGNINLGRQQPMENIYNTYMQRNNNPIPPPQHSLPDTIAAATKVITADPNFQSALAAALTSIIGSGSTQGNNQGAGENLNQKMKWGELFSSSSALPSSSKVNGCASSFLNKSPANSQPGSLMFLQPPMPLSSPKSASGSPGDNRDKKN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2144 559 MobiDBLite consensus disorder prediction 35 53 - -
Ssu1g2144 559 MobiDBLite consensus disorder prediction 1 67 - -
Ssu1g2144 559 MobiDBLite consensus disorder prediction 137 156 - -
Ssu1g2144 559 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 19 555 - -
Ssu1g2144 559 Gene3D WRKY domain 225 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2144 559 MobiDBLite consensus disorder prediction 169 223 - -
Ssu1g2144 559 Pfam WRKY DNA -binding domain 239 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2144 559 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g2144 559 MobiDBLite consensus disorder prediction 207 221 - -
Ssu1g2144 559 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 19 555 IPR044810 GO:0003700
Ssu1g2144 559 MobiDBLite consensus disorder prediction 507 559 - -
Ssu1g2144 559 SMART WRKY_cls 238 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2144 559 MobiDBLite consensus disorder prediction 169 187 - -
Ssu1g2144 559 MobiDBLite consensus disorder prediction 106 122 - -
Ssu1g2144 559 ProSiteProfiles WRKY domain profile. 233 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2144 559 MobiDBLite consensus disorder prediction 104 156 - -
Ssu1g2144 559 SUPERFAMILY WRKY DNA-binding domain 231 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2144 559 Coils Coil 57 84 - -
Ssu1g2144 559 MobiDBLite consensus disorder prediction 335 358 - -
Ssu1g2144 559 MobiDBLite consensus disorder prediction 507 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2144 Ssu-Chr1 61101181 61106086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2144 63 475 WRKY Transcription Factor Family AT1G18860 36.907 8.79e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g2144 WRKY 5.9e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2144 - - gmx:100804403 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2144 1 61101181 61106086 Ssu6g1285 6 20863593 20868078 ECH
Ssu3g0486 3 11597723 11600363 Ssu1g2144 1 61101181 61106086 ECH
Ssu8g2330 8 60732831 60733673 Ssu1g2144 1 61101181 61106086 ECH
Ssu2g1633 2 64931430 64933682 Ssu1g2144 1 61101181 61106086 ECH
Ssu1g2144 1 61101181 61106086 Ssu1g2144 1 61101181 61106086 ECH