Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2141 ATGGGGAAATCACCAGGAAAATGGATCAAAACCGTACTATTTGGGAAAAAGTCATCcaaatcaaatatttcaaaaggAAGAGAGAAGCctgttaataaaaaagaagcagTGGTTGCTTCCAACATGTTGGAAAATGGTTTGGCCTTAGTTCCAACCCCCAATGAGATCGCTACAAATGAGGAGGACCTTGAACTGGAGAATGAAGAATCAGAAAATGTTTTACCTGGGAATCAAGTAAGAGACATTATGGGATCTGTTGACCCAGATGCACCACCTGATCCAGAGAAAATCAGGCAGGAGGAAGCAGCAACAAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCTCGCAGGGCATTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTGTTACATTATGCTGTATGTATGGAATTCTAAAGTTACAAGCACTTGTCCGTGGAGGAAGGGTTAGACAGTCTAATGTTGGATTTGAAATCCATGAGAAGTGCAATCTATTTAAGCTTCTGGATGGCAAGCTTGGTGAGCCAGTTGGTATTTCCACAAAAATTTCAAAGCTGTCTGCAAATACTTTCATTCGTAAGCTTCTTGCTTCATCAATTACGATAATGGCCCTGCAACTGCAATATGTTAGTGGAGATCCAAATTCAGTCTTAAGCTGGTTGGAGCGCTGGTCATCATCTTACTTTTGGAAACCAGTTCCACAACCCAAGAAGATCCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATATTTCAAATGGAGAAGCTCAAATTACCAAGTCAAAACGCACTAACAGGAAGCTTcctattacaaattttgaaccAGTCCCAGTGCCAACAATTCCTGAATTTGAGAAACCAAAACGTAATTTCAGGAAAATACCATACCAAGTGTCAGATCCAGAGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTACTCAGCCAGAAGTTGAATGTGAGGCCCCAAAGCAGCATTTGGAAAGGGCAACAGTTATTCCAGGTCATGCTACTTCAGAACAAGCGATCATTACTTCTGATGAAAAGATCAAAAAGGAACCAATTTTGACCATCTCTAATGTAACTGAATTAGAAAATACTCCAACACTGTCAGTTAACAAGGAGGTGTCTGACATTCCAAGCAGTTATGAAGAGTTTGTAGAATCAAAGCCCTTGGCAGAGACTACAACTAATGATAGAAACACTTCTCACAACGAAGTTAAAAATGAACTGGGAAATCTACCAGAGACGatttttaaagatgaaaatttcCTATTAACAAATGAAGATTTGAGTCATAAAGAAGAGCTAACAGTTAATGAAAACCAGAAACCTACCCGTAAAGCCTCAAATTTGGCAAAGCAGGAGAATGGAGAAGATGGCTTAAAGAATAGTCCAAAATTACCGAGTTATATGGTAGCAACTGAATCTGCCAAGGCAAAGTTGAGGGCACAAGGATCCCCAAGGTTTGGACAAGATGAAATTGAGAGAAACGTCACTGCTGGTGCTGGGAGACATTGTCAGCCATCTTCAACTAACAAGAAGATTAGTTCGCATTCACCTAGGACCCATAGATCAGTTCAGTCAGGTGGCAAAGGGGGCAACAGAAGTGACAAAACCATACCATCTTCTAAAGGAGGGAACGGGAAGGTAATTCAAGCAGAGTGGAGGAGGTGA 1761 0.3981 MGKSPGKWIKTVLFGKKSSKSNISKGREKPVNKKEAVVASNMLENGLALVPTPNEIATNEEDLELENEESENVLPGNQVRDIMGSVDPDAPPDPEKIRQEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGILKLQALVRGGRVRQSNVGFEIHEKCNLFKLLDGKLGEPVGISTKISKLSANTFIRKLLASSITIMALQLQYVSGDPNSVLSWLERWSSSYFWKPVPQPKKIRDSKSQRKQGNISNGEAQITKSKRTNRKLPITNFEPVPVPTIPEFEKPKRNFRKIPYQVSDPEQENPQSELEKVKRNLRKIHNPVVENATQPEVECEAPKQHLERATVIPGHATSEQAIITSDEKIKKEPILTISNVTELENTPTLSVNKEVSDIPSSYEEFVESKPLAETTTNDRNTSHNEVKNELGNLPETIFKDENFLLTNEDLSHKEELTVNENQKPTRKASNLAKQENGEDGLKNSPKLPSYMVATESAKAKLRAQGSPRFGQDEIERNVTAGAGRHCQPSSTNKKISSHSPRTHRSVQSGGKGGNRSDKTIPSSKGGNGKVIQAEWRR 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2141 586 MobiDBLite consensus disorder prediction 463 497 - -
Ssu1g2141 586 MobiDBLite consensus disorder prediction 259 281 - -
Ssu1g2141 586 PANTHER IQ-DOMAIN 5-RELATED 1 574 - -
Ssu1g2141 586 PANTHER PROTEIN IQ-DOMAIN 31 1 574 - -
Ssu1g2141 586 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Ssu1g2141 586 MobiDBLite consensus disorder prediction 413 439 - -
Ssu1g2141 586 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Ssu1g2141 586 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Ssu1g2141 586 Pfam Protein of unknown function (DUF4005) 483 565 IPR025064 -
Ssu1g2141 586 SMART iq_5 98 120 IPR000048 GO:0005515
Ssu1g2141 586 SMART iq_5 121 142 IPR000048 GO:0005515
Ssu1g2141 586 MobiDBLite consensus disorder prediction 510 586 - -
Ssu1g2141 586 MobiDBLite consensus disorder prediction 532 575 - -
Ssu1g2141 586 Gene3D - 97 145 - -
Ssu1g2141 586 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Ssu1g2141 586 MobiDBLite consensus disorder prediction 76 98 - -
Ssu1g2141 586 MobiDBLite consensus disorder prediction 247 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2141 Ssu-Chr1 60994254 60999492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2141 1 586 IQD Protein Family AT1G74690 42.995 3.01e-118 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2141 - - gmx:100786022 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2141 1 60994254 60999492 Ssu6g1283 6 20826792 20831879 ECH
Ssu2g1629 2 64875033 64877534 Ssu1g2141 1 60994254 60999492 ECH
Ssu1g2141 1 60994254 60999492 Ssu1g2141 1 60994254 60999492 ECH