Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2140 ATGCGTTGTCCGGGGGCGCTTCATTTCATGGAGAAAAACGACACCGTTATAAGCTACGGGGTTCAGACGAACTCGACTAGTCTTCAGAGGCGAGGGAAATATGAGGACCCTACGTTTTCCTTCCAGCTCCCGCTTCAGCTTGCCGCGGAGCGCGAAATTGCCAGATACCTTATTCGagAAGCGGAATTCAGTTGGAATGTGTTTCTGAGGGAATTCGCGCACCCTGCCATGGATCCTTTCTCCTCCGTGAAGACAACTGGTCCCACGTTTTTCCTCGCGATCGCcatgtttaattttgttcttcaGATGAGCTCTTTGGTGACGGAGAAAGAGCTTAAACTTCGCCAGGCAATGACAATGATGGGCCTTTACGACACTGCTTACTGGTTATCCTGGCTCACCTGGGAGGCAGTTATCACAATCCTATCGTCCCTTCTCATAGTTCTCTTTGGAATGATGTTCCAGTTTCgttttttcttgaaaaacagTTTTGCGGTCCTgttctttttgttcttcctGTTTGAACTTAATATGacTGGCTTGGCCTTCATGTTATCTGCTTTCATTGGGAAATCATCTTCGGCAACAACAGTGGGCTTCTCTCTATTTATTGTGGGCTTTTTGACTCAGCTTGTGGTACAAGGAGGATTTCCTTACAAAAAGAGTTTCTCCAAAACTTTACGAAATGTGTGGTCGATATTCCCACCTAATCCTTTTGCTCAAGGTATACAATTGCTTTCAGATGCAGTTGCAACTTCTGAAGACAAAGGTGTTAGCTGGAGTAAACGGCGACAATGCACTCTTACTGATCAAGACTGTGTGATAACTATTGATGGTATTTATAAATGGCTTGCAGCTACATTCTTTGTCTGGTTAGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATTGGGTGTGAGGAAATCAATTTTGTACTTTCTAAATCCCAGTTATTGGATGGGAAAAGGAGGTCAGAAAGTGAAAGAGGGTGGGGTTTTTAGTTGTGTAGGTTCAGCCCCACGTCAAGAACAAAGTACACCAGATGATGAAGATGTCcttgaagaagaaaacaaagtgAAACAGCAACTAACAGAAGGTCTGGTAGACGCAAATGTTGCTGTTCAGATACATGGCCTTGCGAAGACATATCCTGGCACACGTGACATTTGTTGTTGCTGCTGTAAACGTAAAGGAACTGCTCCTTACAATGCTGTTAAGGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCAATGGAGCTGGAAAAACTACAGCTATTAATTGTTTGACAGGGATAACTCCAGTAACTGATGGAGATGCATTGATTTATGGACTTTCAATCAGAAGCTCTACTGGCATGTCAAACATTCGCAAGTTTATAGGAGTATGTCCACAgTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCAATTACCCAGACATCATTAGCAGAGGTGAGACTCACAGATGCAGCCAGAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAACGTCGTCTTAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGttagtcattttggatgaacCGACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAAATGCCAAAAGAGGGCGTGCCATTGTTCTTACTACACACTCTATGGAAGAAGCTGACATTCTAAGTGACCGCATAGGAATCATGGCAAAAGGAAGGCTTCGCTGCATTGGCACCTCAATCAGATTGAAGTCACGTTTTGGTACTGGTTTTATTGCTAATATCAGCTTCTATGGAAACAATATTGAACGTAGTCCTGCCAATGGAGATGCAATATCTACAAAGCATAGCGAGGCAGTGAAGAAATTCTTTAAGAATCATTTAGATGTAGTGCCAAAAGAGGAGAACAATAACTTTCTAACTTTTGTAATTCCTCATGACAGAGAGGCGCTCCTGACGAATTTCTTTTCGGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGACGTCCAGCTTGGTCTAACAACTCTCGAAGAAGTTTTCTTGAATATTGCAAAGCAAGCAGAGTTAGAAAGTGCTGCAGCTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAGATTCCTATCGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCAGAAAACCCCACAGGGTTTATGGTAGAAGTATATTGGGAGCAAGATGATACTGGTGCCCTATGTATTGCTGGCCACTCGCAGAAAGTTCCTATTCCTCATAGCGTTCAACTATCATCCTCTCCTTCTGCAAGACATCGTAGAAATTTACGCCGGTCAGAACCAGTTCATGGGGTTGTGATTGATCCAAGTCAAGTTAGTTCAGTCAATTTTCAGTGA 2481 0.4192 MRCPGALHFMEKNDTVISYGVQTNSTSLQRRGKYEDPTFSFQLPLQLAAEREIARYLIREAEFSWNVFLREFAHPAMDPFSSVKTTGPTFFLAIAMFNFVLQMSSLVTEKELKLRQAMTMMGLYDTAYWLSWLTWEAVITILSSLLIVLFGMMFQFRFFLKNSFAVLFFLFFLFELNMTGLAFMLSAFIGKSSSATTVGFSLFIVGFLTQLVVQGGFPYKKSFSKTLRNVWSIFPPNPFAQGIQLLSDAVATSEDKGVSWSKRRQCTLTDQDCVITIDGIYKWLAATFFVWLVLAIYFDNIIPNALGVRKSILYFLNPSYWMGKGGQKVKEGGVFSCVGSAPRQEQSTPDDEDVLEEENKVKQQLTEGLVDANVAVQIHGLAKTYPGTRDICCCCCKRKGTAPYNAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGITPVTDGDALIYGLSIRSSTGMSNIRKFIGVCPQFDILWDALSGQEHLQLFATIKGLSPASIKSITQTSLAEVRLTDAARVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFYGNNIERSPANGDAISTKHSEAVKKFFKNHLDVVPKEENNNFLTFVIPHDREALLTNFFSELQDREEEFGISDVQLGLTTLEEVFLNIAKQAELESAAAEGRLVTLTLTSGESVQIPIGARFVGIPGTESAENPTGFMVEVYWEQDDTGALCIAGHSQKVPIPHSVQLSSSPSARHRRNLRRSEPVHGVVIDPSQVSSVNFQ 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2140 826 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 1 794 - -
Ssu1g2140 826 SMART AAA_5 416 600 IPR003593 -
Ssu1g2140 826 CDD ABC_subfamily_A 376 611 - -
Ssu1g2140 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 613 IPR027417 -
Ssu1g2140 826 Pfam ABC-2 family transporter protein 77 297 - -
Ssu1g2140 826 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1 794 IPR026082 GO:0016021|GO:0055085|GO:0140359
Ssu1g2140 826 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524
Ssu1g2140 826 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 623 IPR003439 GO:0005524
Ssu1g2140 826 MobiDBLite consensus disorder prediction 788 811 - -
Ssu1g2140 826 Pfam ABC transporter 410 552 IPR003439 GO:0005524
Ssu1g2140 826 Gene3D - 367 622 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2140 Ssu-Chr1 60984114 60989673 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2140 420 622 Calmodulin-binding Proteins AT2G36910 23.474 1.29e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2140 - - gmx:100786538 1464.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2140 1 60984114 60989673 Ssu1g2140 1 60984114 60989673 ECH