Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2138 ATGGAAAATGGAAACACAGCCAACGAACCTGCGAGTTTCTGGACTCAAGCAAACGCTCTCCTTAGGAAGAATTTAACCTTTCAGAAACGAAATGTCAAAACAACCGTTCGGCTCATCATGTTCCCGTTCGTTTTGTGCTTGTTGCTGCTTCTCATCCAAAAGGTGCTGGACGGTCAATTGAACAAGGCTGGGAACAAGTGCGGCTGCATTTGTGCTAAGAAACAAGGGGACAGGTGTCTCCAGGAGGTGTGCGGGATTCAGTATTCGGATTTGGACCAAGTTGCCACGTGTCCCATCCCTAACCCTCCAGAATGGCCTCCCTTGTTGCAATTGCCGGCCCCACAATACCGAGCTGTGAGAACGGAAAATTTTCCCTTTTCTGATTTTCCAAACCCGTCGTGCAGGAGGAATGGCTCTTGCCCTGTCACTATGCTCTTCACCGGCACTAACCAGTCTTTtggagaaaTTATATCTGGGAATATGATCCCAAGTACCTTGAGTGCTATAAACAACTCTGATATTGTGACTAGTTTGGCAACAAATGTCATGGGATCAGAATCAGAGCCAGAGTACACCAATTTTCTGGAATCTGCTTTCTTTTCGGATCTTCCTATTTATTATCTACTAAGTCAGTGCACGCAGAACTCTACATTCTCCATTCCTATTAAGATATCAGCTATTAGCAGACAGCAAGAGGTAATATGTGCTCAGGGTTTACGCTTATGGCGTAATAGTTCTTCTGAGGTGAACAATGAGCTATATAAAGGTTATCGGAAAAGTAACCCAGAGAGACAGATTGATGAAATAGCTGCAGgttatgattttttaaattcaaatggGAATATATTTAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACTGGCTTTGATCAAATTGCATTGGCGCGTATTCCTCGTTCTGTAAATTTGGTATCAAATGCCTACCTTCAGTTTTTGTTGGGTCCTGGTACCaaaatgttgtttgagtttGTAAAGGAAATGCCGAAACCTGAGACCCCGCTTAAATTTGATTTGGCTTCTCTTCTAGGTGGTCTCTTCTTTACATGGGTCATACTACAACTTTTCCCTATTGCCTTGACATCGCTAGTATATGAGAagcaacaaaaattaagaatcatgATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCATATGGTTATTTTCTTGCCATATCCGTTGTTTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGggtTAAAATTCTTCACAATGAATGACTACAGCATCCAATTCGTGTTTTATTTCAtctatataaatttacaaatttcctTGGCTTTTTTATTGGCTTCCCTGTTTTCAAATGTTAAAACTGCTACAGTAATTGCATATATAGGTGTGTTTGGAACTGGGCTATTAGCTGGctttcttttccaattttttgttCAAGACACATCGTTTCCtaGAGGGTGGATCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGATTATATGAGTTTTCAGAATCTGCCTTTAGCGGGGATGCTTTGGGGATTGATGGTATGCGTTGGAGTGATCTGGGTGATAGCACAAATGGCATGAAGGAGGTCTTAATTATCATGTCTGTGGAATGGCTGTTGGTGCTTTTCTTTGCTTATTATATTGATCAACTTTTGTCATTAGGAAGCAGAAAAAGTCCTCTCTTTTTCTTGAAAGGATTTCAAAAAAAGCCTTATTCATCTTTTCGGAAGCCTAGTATCCAAAGGGAGAGACCTAAGGTTTTTGTTCAGATAGAGAAATCTGATGTCAATCAAGAGAGGGAGAAGGTGGAGCAACTACTACTTGAACCAACTATTAATCAAGCAATTGTATGCGACAACCTAAGAAAGGTCTATCCTGGGAGGGATGGTAACCCAGAGAAACTTGCAGTGAGAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCTAATGGTGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTCACGAAGCCAAGCTCTGGTACAGCATTTGTTCAAGGTCTTGACATAAGAACTCATATGGATGGAATATATACTAGCATGGGTGTATGTCCACAACATGActtgcTGTGGGAATCCCTGACAGGAAGAGAGCACCTGCTTTTTTATGGCAGACTTAAAAATCTTAAAGGCTTAGCCTTAACACAAGCAGTGGAAGAATCGTTGAAAAGTGTAAACCTTTTTCATGGAGGAATTGCTGATAAACAAGCTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGAGATCCTAAAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCATCAAGAAACAGCTTATGGAATGTTGTTAAGCGTGCAAAACAGGATCGTGCAATCATTCTTACTACACATTCCATGGAAGAGGCAGAAGTCCTATGCGATCGATTAGGAATATTTGTAGATGGTAGCTTGCAATGCATAGGAAATCCAAAGGAGTTGAAAGGCAGGTATGGAGGAACTTATGTCTTCACAATGACAACATCTATAGATCATGAAAAGGATGTAGAGAATTTGGTGCAGCAGCTCTCCGCAAATGCTAACAAGATTTACCATATCTCTGGTACCCAAAAGTTTGAGCTACCAAAAGACGAGGTTAAAATAGCAAATGTATTCCAAGCTGTTGAAACTGCAAAGAGAAGCTTCAGAGTTTCAGCGTGGGGTTTAGCTGATACCACATTGGAAGATGTCTTCATTAAAGTTGCACGTGGGGCTCAAGCATTTGAGACCTTGTCATAA 2853 0.3964 MENGNTANEPASFWTQANALLRKNLTFQKRNVKTTVRLIMFPFVLCLLLLLIQKVLDGQLNKAGNKCGCICAKKQGDRCLQEVCGIQYSDLDQVATCPIPNPPEWPPLLQLPAPQYRAVRTENFPFSDFPNPSCRRNGSCPVTMLFTGTNQSFGEIISGNMIPSTLSAINNSDIVTSLATNVMGSESEPEYTNFLESAFFSDLPIYYLLSQCTQNSTFSIPIKISAISRQQEVICAQGLRLWRNSSSEVNNELYKGYRKSNPERQIDEIAAGYDFLNSNGNIFNVSIWYNSTYKNDTGFDQIALARIPRSVNLVSNAYLQFLLGPGTKMLFEFVKEMPKPETPLKFDLASLLGGLFFTWVILQLFPIALTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLAISVVYMLCFVIFGSVIGLKFFTMNDYSIQFVFYFIYINLQISLAFLLASLFSNVKTATVIAYIGVFGTGLLAGFLFQFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSESAFSGDALGIDGMRWSDLGDSTNGMKEVLIIMSVEWLLVLFFAYYIDQLLSLGSRKSPLFFLKGFQKKPYSSFRKPSIQRERPKVFVQIEKSDVNQEREKVEQLLLEPTINQAIVCDNLRKVYPGRDGNPEKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPSSGTAFVQGLDIRTHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGLALTQAVEESLKSVNLFHGGIADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNSLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSIDHEKDVENLVQQLSANANKIYHISGTQKFELPKDEVKIANVFQAVETAKRSFRVSAWGLADTTLEDVFIKVARGAQAFETLS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2138 950 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 865 IPR003439 GO:0005524
Ssu1g2138 950 Pfam ABC transporter 650 794 IPR003439 GO:0005524
Ssu1g2138 950 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524
Ssu1g2138 950 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 9 950 IPR026082 GO:0016021|GO:0055085|GO:0140359
Ssu1g2138 950 SMART AAA_5 658 841 IPR003593 -
Ssu1g2138 950 Coils Coil 601 621 - -
Ssu1g2138 950 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 9 950 - -
Ssu1g2138 950 CDD ABC_subfamily_A 632 853 - -
Ssu1g2138 950 Gene3D - 620 895 IPR027417 -
Ssu1g2138 950 Pfam ABC-2 family transporter protein 336 558 - -
Ssu1g2138 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 856 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2138 Ssu-Chr1 60931923 60940093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2138 637 876 Calmodulin-binding Proteins AT2G36910 24.111 1.31e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2138 - - gmx:100805474 1700.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2138 1 60931923 60940093 Ssu1g2138 1 60931923 60940093 ECH