Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2134 ATGTCTAGCAGGAGGTCACGGTCAAGGCAAACAAGTAGTTCAAGGAATATCACCGACGATCAGATCAATGATCTTGTCTCCAAGTTGCAACAGCTTCTTCCAGAGATTCGAGATAGGCGCTCTGACAAGGTTTCAGCTTCCAAGGTGTTGCAAGACACATGCAACTATATTAGAAGCTTACACAGGGAAGTGGATGACCTAAGCGAGCGCTTATCTGAGCTCTTGGCTACCACTGACACGGCACAAGCtgcaataattagaaatttactTAGGCAATAG 279 0.4373 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQDTCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLRQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2134 92 Coils Coil 57 77 - -
Ssu1g2134 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Ssu1g2134 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Ssu1g2134 92 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g2134 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Ssu1g2134 92 CDD bHLH_AtPRE_like 17 77 - -
Ssu1g2134 92 Gene3D - 18 89 IPR036638 GO:0046983
Ssu1g2134 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Ssu1g2134 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2134 Ssu-Chr1 60841252 60842318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2134 17 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 81.818 2.01e-39 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g2134 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2134 - - gmx:100527636 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0474 3 11087605 11088936 Ssu1g2134 1 60841252 60842318 ECH
Ssu8g2320 8 60496496 60498219 Ssu1g2134 1 60841252 60842318 ECH
Ssu2g1621 2 64645582 64646557 Ssu1g2134 1 60841252 60842318 ECH
Ssu1g2134 1 60841252 60842318 Ssu1g2134 1 60841252 60842318 ECH