Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2128 ATGTCCAGCCAGAGAAGCTCCAGATCTTCAAAATTCACAGTGATTGAGATTAATGATCTGATATTGAGGCTACAAGCACTGCTACCACAACTAAACCAAACAAGCAACTCAAGGGCATCAGTTAGCGTGAGAAAGATCATGAAGGAAACTTGCTCTCACATCAATAAGCTACAGAAAGAGGTGGAAGACCTTGGTAAAAGGCTAGCTGTGCTGATGGATTCTGTAGACGTCAGTGATATTAACGAGGAGCGTCTTACAAGACTTTTGCAACACTAA 276 0.4203 MSSQRSSRSSKFTVIEINDLILRLQALLPQLNQTSNSRASVSVRKIMKETCSHINKLQKEVEDLGKRLAVLMDSVDVSDINEERLTRLLQH 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2128 91 PANTHER DNA BINDING PROTEIN 1 90 - -
Ssu1g2128 91 PANTHER DNA BINDING PROTEIN 1 90 IPR044172 -
Ssu1g2128 91 Coils Coil 47 74 - -
Ssu1g2128 91 Gene3D - 8 87 IPR036638 GO:0046983
Ssu1g2128 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 62 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2128 Ssu-Chr1 60590683 60591208 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2128 1 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 46.341 3.55e-14 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2128 - - gmx:100790746 130.954