Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2127 ATGGATTCCCTGAAGATGTTCAAAGGTTACGGCAAACTCGAACACGACCAGCACCACCTCGAAGATCAACAATATCGCAACAGCCCCAAACCCAAATCCTCGAAACCCTTCGTCGCCACCCTTTCCATCCTCGCGATCCTCTTCCTCACGTTCACCCTCGCCTTCGCCATCGCGTCCCTCATCCACCACACCACCGCCGAGTCGCAGCAACTCCTCGACTCGGCCGAGTCCATCCGAGTCGTCTGCAACGTCACGCGCTTCCCCGACGCGTGCCTCGCCGCCATCGCCCCCTCGCGCAACGCCACCGACCCCTTGGCGATCCTCGCCCTCTCGCTCCGCGCGTCGATCCACGCGCTCCGGAGCCTCGCGTCCGCGATCGGAGCCACGGAGGGACGCGCAGTCGCCGACTGCAGGGACCAGCTGGACGACGGGCTGAGTCGACTCAACGACTCGCTGTCGGCGGCGGCGGCGCTGACGGACGCCAGGGTGGCCGACGTCCAGACGTGGGTGAGCGCGGCGGCGACGGACCAACAAACGTGCCTCGACGGGCTGGAAGAGGTGGGTGACGTGGCGGCCCTTAAGGAGGTGAAAAATTTGATGAAGAGGTCCACCGAGTACACCAGTAACAGCTTGGCTATTGTTGCTAATATTCACAACTTGTTACGCCAGTTCCACATGACACTGCATTGA 690 0.6232 MDSLKMFKGYGKLEHDQHHLEDQQYRNSPKPKSSKPFVATLSILAILFLTFTLAFAIASLIHHTTAESQQLLDSAESIRVVCNVTRFPDACLAAIAPSRNATDPLAILALSLRASIHALRSLASAIGATEGRAVADCRDQLDDGLSRLNDSLSAAAALTDARVADVQTWVSAAATDQQTCLDGLEEVGDVAALKEVKNLMKRSTEYTSNSLAIVANIHNLLRQFHMTLH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2127 229 PANTHER PECTINESTERASE 3 224 - -
Ssu1g2127 229 SMART PMEI_2 73 213 IPR006501 GO:0004857
Ssu1g2127 229 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 218 IPR035513 -
Ssu1g2127 229 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 218 IPR035513 -
Ssu1g2127 229 TIGRFAM PME_inhib: pectinesterase inhibitor domain 50 217 IPR006501 GO:0004857
Ssu1g2127 229 CDD PMEI-like_3 81 219 - -
Ssu1g2127 229 Pfam Plant invertase/pectin methylesterase inhibitor 77 213 IPR006501 GO:0004857
Ssu1g2127 229 PANTHER PECTINESTERASE 1-LIKE 3 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2127 Ssu-Chr1 60587852 60588541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2127 1 229 Carbohydrate Esterase AT1G53840 32.422 2.00e-30 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2127 - - gmx:100789567 278.1