Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2123 ATGGGATCGGAGACTCTTGCCCCTGTAGTTGAGAAGATCAACACGTCACAAGAGACATCAAGAAAGAGGTCTTGTCCCTGTAAAAAGAACCAAGGGAAAGTCCCTACAAGAGTTCGCAAAgctgaaagagagaaaataaagcGTGAACATTTGAATGAACTGTTTCTTGGTCTTGCTAATGCACTTGGGGTAACAGACCTTAGTGAACAGAGCAATGGAAAAGCTTCTATATTGAGGGAAGCCACCAAATTGCTGAAAGACTTGCTCAGTCAGATCGAAACCCTGAAAAAGGACAGTGCATCTTTGCTATCTGAAACTCATTATGTGACTATGGAGAAGAATGAGGTGGTGGAGGAGAATTCTTCTCTAAAAACTCAAATTGAGAAGCTTCAAGGTGAGATAAAAACAAGAGTAGCCCAATCTAAACCTGACTTGAATGTACCTCCTCATTTGGAACTTCAGCAACTAGAGAAGACAACAAAGTTTCCTAAAGACAGTCACCAATTGTCTAGCATAAAACCTACATTGCAGCAAGGGCAAGCAGTTTTGGTTGTACCCTTAAGTCACCATCACCAAGATGCTTTGTCAACTCATAAAGTTGCTGAGCTGACCCCAAAACCCACCTCCACTATCAGTAAACCACATGCCAGATATCCCACCCCAATGGATTTATGGCCATTACAACTGCTTGCAGGTCAACCAACATCAAGTTAA 714 0.4104 MGSETLAPVVEKINTSQETSRKRSCPCKKNQGKVPTRVRKAEREKIKREHLNELFLGLANALGVTDLSEQSNGKASILREATKLLKDLLSQIETLKKDSASLLSETHYVTMEKNEVVEENSSLKTQIEKLQGEIKTRVAQSKPDLNVPPHLELQQLEKTTKFPKDSHQLSSIKPTLQQGQAVLVVPLSHHHQDALSTHKVAELTPKPTSTISKPHARYPTPMDLWPLQLLAGQPTSS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2123 237 MobiDBLite consensus disorder prediction 1 40 - -
Ssu1g2123 237 PANTHER TRANSCRIPTION FACTOR BHLH47 1 236 - -
Ssu1g2123 237 Coils Coil 78 105 - -
Ssu1g2123 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 88 IPR011598 GO:0046983
Ssu1g2123 237 PANTHER TRANSCRIPTION FACTOR BHLH47 1 236 - -
Ssu1g2123 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 113 IPR036638 GO:0046983
Ssu1g2123 237 Gene3D - 28 105 IPR036638 GO:0046983
Ssu1g2123 237 Coils Coil 113 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2123 Ssu-Chr1 60523589 60525550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2123 27 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 45.045 4.02e-49 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2123 - - mtr:MTR_4g108360 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2123 1 60523589 60525550 Ssu6g1274 6 20695477 20697713 ECH
Ssu1g2123 1 60523589 60525550 Ssu1g2123 1 60523589 60525550 ECH