Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2120 ATGGAGGGAGGTGATGacttccaccaccaccatcaccatcaccaccagcaccagcaccgaCAAAACTTCCCATTCCAATTCCTCGAGAAGAAAGAAGACCAAGACCCCTCTTCTTGCTCCACCTCATCCCCATACCCATCCCTAGCCATCTCAGCCGAGCCCTCCACCTCCAACTCAACCCCATCCAACAATAACCAGCTCCTCCCCACGCCCTCCGAACCCTCCCCGCAAAAACCACCTCCAAAAAGAACCTCCACGAAAGACCGCCACACCAAAGTCGACGGCCGCGGCCGTCGAATTAGGATGCCTGCTCTCTGCGCCGCCAGAGTGTTCCAGCTCACGCGTGAGCTGGGACACAAGTCTGACGGGGAGACCATAGAGTGGCTCCTCCAGCAGGCGGAGCCTGCTGTCATCGCCGCCACCGGCACCGGCACCATCCCCGCTAACTTCACATCCCTCAACATATCCCTCCGAAGCTCGGGCTCCTCCATGTCCGTCCCCTCCCAGCTACGATCCAGCTACTTCAACTCGAACTTTTCACTCCAGCCTCGAAGAAGCCTATTCTTGGAGAACACCAACACTTCCACCACGCTCCTCAATTTTCAATCCAACAACCCCATCTCCAGCTCCGTGTTCCAACCCAAGCACGAATTGCGCGAGTCATCATCGCTAGACTTGTCCTCGGAGAGCACCGAAGAAGGTTTGGGAAGGAAAAGAAGACCCTCGGAGCAAGACTTATCCTCAACCGTGCAACACCAAGTTGGGAGCTACTTGATGCAATCAAGCACTTCAGGGACAATTCCGGCGAGCCACGCTCAGATTCCGCCGGCGAATATATGGATGGTGGCGAATTCGAATAGCCAAGGTGTGAGTGGTGAGGCTCCTTGTGGACATTCCCTGGGGTGA 906 0.5342 MEGGDDFHHHHHHHHQHQHRQNFPFQFLEKKEDQDPSSCSTSSPYPSLAISAEPSTSNSTPSNNNQLLPTPSEPSPQKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNSNFSLQPRRSLFLENTNTSTTLLNFQSNNPISSSVFQPKHELRESSSLDLSSESTEEGLGRKRRPSEQDLSSTVQHQVGSYLMQSSTSGTIPASHAQIPPANIWMVANSNSQGVSGEAPCGHSLG 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2120 301 MobiDBLite consensus disorder prediction 37 71 - -
Ssu1g2120 301 MobiDBLite consensus disorder prediction 1 99 - -
Ssu1g2120 301 ProSiteProfiles TCP domain profile. 86 140 IPR017887 -
Ssu1g2120 301 MobiDBLite consensus disorder prediction 82 99 - -
Ssu1g2120 301 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 293 IPR005333 GO:0003700
Ssu1g2120 301 Pfam TCP family transcription factor 84 244 IPR017887 -
Ssu1g2120 301 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 12 293 - -
Ssu1g2120 301 MobiDBLite consensus disorder prediction 209 250 - -
Ssu1g2120 301 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2120 Ssu-Chr1 60489542 60490447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2120 17 155 TCP Transcription Factor Family AT1G69690 66.187 1.28e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu1g2120 TCP 4.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2120 - - gmx:100809154 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2120 1 60489542 60490447 Ssu1g2120 1 60489542 60490447 ECH