Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2111 atGGGAAGACCACCTTGCTGTGACAAAGTTGGGATTAAGAAGGGGCCTTGGACTCCAGAGGAAGACATCGTCTTGGTCTCTTACATTCAAGAACATGGACCCGGGAATTGGAGATCAGTTCCCACTAATACagGTTTGATGAGATGCAGCAAAAGCTGCAGACTCAGATGGACTAATTATCTCCGACCCGGTATCAAGCGAGGGAATTTCACCGATCatgaagaaaaaatgataatccACCTCCAAGCACTTCTGGGCAACAGATGGGCTGCTATAGCTTCCTATCTTCCGCAGAGGACAGACAATGATATCAAGAACTATTGGAATACCCATttgaagaagaagctgaagaagatTCAAACTGGGAGTGATGATGATAATGACAAAGGAAACTCTTGTTCACAGATAAAGGGTCAGTGGGAGAGAAGGCTTCAAACAGATATGCACACGGCCAAACAAGCCTTATGTGAGGCACTGTCTCTAGACAAACCAACCCATATTTTCCCTGAGACCAAATTAACCTCCGCTTCCCATCACCATCACCCCCACCCCACAACATCAAACCAGACATCCTTATACGCATCAAGCACAGAAAACATAGCCAGATTGCTGGAGAATTGGATGAAGAAATCCCCAAACAAAACCGAAACAAACTCCTTCAGCAACATGATAGTAACCACAGGGTCCAGTTCCAGTGAGGGAACACAGAGCACCATCACATGTACACAGGACCATGCTCTTGACTCCTTGTTGAGCTTCAACTCTGATCGTTCTCAATCTGTGTCAGCGGAGGAAAACACCAACTTGGGTGAGAGCAAGCCGAACCATGAGACGCAAGTCCCTCTCATGTTGCTGGAGAATTGGCTTTTGATGATGCGGCACCTCAATGCAATGAAGATCTAA 903 0.4441 MGRPPCCDKVGIKKGPWTPEEDIVLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKIQTGSDDDNDKGNSCSQIKGQWERRLQTDMHTAKQALCEALSLDKPTHIFPETKLTSASHHHHPHPTTSNQTSLYASSTENIARLLENWMKKSPNKTETNSFSNMIVTTGSSSSEGTQSTITCTQDHALDSLLSFNSDRSQSVSAEENTNLGESKPNHETQVPLMLLENWLLMMRHLNAMKI 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2111 300 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu1g2111 300 CDD SANT 69 112 IPR001005 -
Ssu1g2111 300 SMART sant 66 114 IPR001005 -
Ssu1g2111 300 SMART sant 13 63 IPR001005 -
Ssu1g2111 300 CDD SANT 16 61 IPR001005 -
Ssu1g2111 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ssu1g2111 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 290 - -
Ssu1g2111 300 Gene3D - 68 160 - -
Ssu1g2111 300 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu1g2111 300 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu1g2111 300 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu1g2111 300 Gene3D - 13 66 - -
Ssu1g2111 300 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu1g2111 300 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 290 - -
Ssu1g2111 300 MobiDBLite consensus disorder prediction 256 275 - -
Ssu1g2111 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2111 Ssu-Chr1 60288327 60289664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2111 1 264 MYB Transcription Factor Family AT5G62470 55.949 5.79e-108 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g2111 Myb_DNA-binding 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2111 K09422 - gmx:100807020 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2111 1 60288327 60289664 Ssu1g2111 1 60288327 60289664 ECH