Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2110 ATGAAGAAGAGACAGGTGGTGGTGAAAAGAGATGTGGCCAACACTTCATCTTCAGTGATCAGAAACATAAGATATGGGGAGTGCCAGAAGAATCATGCAGCTAATATTGGAGGGTATGCTGTGGATGGTTGCAGGGAGTTCATGGCTAGTACAGGGGAAGGAGCTGGTGGGGCTCTTACATGTGCGGCTTGTGGCTGCCACAGGAACTTTCACAGAAGGGAAGTGCAAACTGAGGTAGTCTGTGAGTACTCTCCTCCTAATTCTGCTCgctaa 273 0.4799 MKKRQVVVKRDVANTSSSVIRNIRYGECQKNHAANIGGYAVDGCREFMASTGEGAGGALTCAACGCHRNFHRREVQTEVVCEYSPPNSAR 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2110 90 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 87 - -
Ssu1g2110 90 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 24 75 IPR006456 -
Ssu1g2110 90 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 74 IPR006456 -
Ssu1g2110 90 Pfam ZF-HD protein dimerisation region 23 75 IPR006456 -
Ssu1g2110 90 PANTHER MINI ZINC FINGER PROTEIN 3 3 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2110 Ssu-Chr1 60138125 60138397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2110 1 88 Zinc finger-homeobox gene family AT1G18835 76.404 5.71e-42 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu1g2110 ZF-HD_dimer 5.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2110 - - gmx:100785967 165.236