Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2104 ATGGAGAATCAGCAACTAACGTTTTGGAAGTCTAATTATGAAATTGATGAAAATCCATTTGCACTTACGTGCCAATCTTCGTCATATGATTATTGCAGgGTTAATGCTAATGATTGGTATCACTGGTCATATGAATTTCCTTTGCAAGATAGCTATCTTGATGCTATCCCTTTTATGAAGTGTTACTATCCACATGACATTTTATATGAAACTCTGCCCATTGAACCAACCCCACTAAGCGTACAAGACTATGACTTTTGGGACGTTAAAAATGTGCTCTCTGTGTGGAACGAAATTGATGGTTCAGATAAACCTGCGTTTTCATCAAGCAACGATGGAGAAAGTGTGAATGAAATGAGGGAAGATTTGAAGGGTAAGCAATgcagagaagagagaagtagcAGTGCGAGAATGTTATCAAGGAAAACTGTTTCTCAATACTTTTACATGCCAATATCACAAGCAGCAAGAGAGCTTAATGTGGGCCTCACACACTTGAAGAAAAGATGCAGGGAGTTAGGAATTCAGAGGTGGCCACACAGGAAGCTAATGAGTCTGCAAACCCTTATAAAGAATATACAAGAGCAAGGAGAGACCGAGGGGcatgaaaatgatgaaaaaataagGACTGCCATTGAGATGTtggaaagagaaaagaggatGGTGGAGGAAATGCCGGATTTGCAACTTGACGATAATACAAGAAGGCTTAGACAAGCTTGTTTTAAGGCTAACTACAAGAAGAGGAAACTCATGGGCTTCAGGTTCATGGAACCCCAGTCTTCTCTTAGTGGTCTGTCCAAGAAGTATTGA 813 0.3727 MENQQLTFWKSNYEIDENPFALTCQSSSYDYCRVNANDWYHWSYEFPLQDSYLDAIPFMKCYYPHDILYETLPIEPTPLSVQDYDFWDVKNVLSVWNEIDGSDKPAFSSSNDGESVNEMREDLKGKQCREERSSSARMLSRKTVSQYFYMPISQAARELNVGLTHLKKRCRELGIQRWPHRKLMSLQTLIKNIQEQGETEGHENDEKIRTAIEMLEREKRMVEEMPDLQLDDNTRRLRQACFKANYKKRKLMGFRFMEPQSSLSGLSKKY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2104 270 PANTHER PROTEIN RKD4 40 260 IPR044607 GO:0003700
Ssu1g2104 270 ProSiteProfiles RWP-RK domain profile. 120 207 IPR003035 -
Ssu1g2104 270 MobiDBLite consensus disorder prediction 105 126 - -
Ssu1g2104 270 Pfam RWP-RK domain 139 186 IPR003035 -
Ssu1g2104 270 PANTHER PROTEIN RKD1-RELATED 40 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2104 Ssu-Chr1 59961714 59962845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2104 16 253 AtRKD Transcription Factor Family AT1G18790 41.909 2.91e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ssu1g2104 RWP-RK 1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2104 - - gmx:100782238 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1259 6 20446453 20447701 Ssu1g2104 1 59961714 59962845 PCT