Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2099 ATGGCCACCGTCACCACTCAAGCTTCCGCCGCCATCTTCCGGCCATGTGCTTCAAAATCGAGGTTCCTGACCGGTTCTTCCGGTAAACTCAACAGGGAAGTGGCTATGAGGCCCATGGGGTGCCCTCCTTCTGCCTCTCTCAAGGTTCAAGCCAAGAAAGGAGAGTGGTTACCAGGCTTGGCATCCCCTGCTTACCTCAATGGCACTCTTGCTGGTGACAATGGATTTGACCCTCTGGGGCTTGCTGAGGACCCAGAGAACTTGAGGTGGTATGTTCAAGCTGAGCTTGTGAATGGGCGTTGGGCCATGTTGGGTGTTGCAGGAATGTTGCTTCCTGAGGTTTTCACCAAATTTGGAATCATTAATGCCCCTAAATGGTATGATGCTGGGAAAGCAGAGTACTTTGCATCATCCTCAACCCTCTTTGTGATTGAGTTCATTTTGTTCCATTATGTGGAGATTAGAAGATGGCAGGACATTAAGAACCCTGGCTGTGTCAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCTCCACATGAGTGTGGATACCCTGGTAGCGTATTTAACCCCTTGAACTTTGCACCAACTTTGGAGGCCAAAGAGAAGGAACTTGCCAATGGGAGATTGGCTATGTTGGCATTCTTGGGATTCATAGTTCAACACAACGTGACTGGCCAAGGACCATTTGATAACCTCTTGCAGCACCTCTCTGACCCATGGCACAACACCATCATCCAAACAGTGCGTGGCTACTAA 759 0.4954 MATVTTQASAAIFRPCASKSRFLTGSSGKLNREVAMRPMGCPPSASLKVQAKKGEWLPGLASPAYLNGTLAGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIINAPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPHECGYPGSVFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGQGPFDNLLQHLSDPWHNTIIQTVRGY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2099 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 252 IPR001344 GO:0009765|GO:0016020
Ssu1g2099 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Ssu1g2099 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Ssu1g2099 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Ssu1g2099 252 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2099 Ssu-Chr1 59800710 59802827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2099 43 245 Chloroplast and Mitochondria Gene Families AT3G61470 51.415 3.42e-71 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2099 K08910 - gmx:100802922 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2099 1 59800710 59802827 Ssu1g2099 1 59800710 59802827 ECH