Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2098 ATGGCGCTTTTGGGGCTTCTCTTGGTGGGATTTCTTTCTCTGGGTTCATCTGTCTCTGCTTCCGGTTATGGTTGGATGAATGCTCATGCAACCTTCTATGGAGGGGGTGATGCCTCTGGCACTATGGGTGGAGCATGTGGATATGGGAACTTGTATAGCCAGGGCTATGGAACTAACACTGCTGCTTTGAGCACGGCTTTGTTCAACAATGGTTTAAGCTGTGGGGCATGTTTCGAGATTAGGTGTGTCAATGACAAAAGGTGGTGCCTTCCACGCTCAGTTGTGGTCACTGCGACCAATTTCTGTCCCCCAAACAATGCACTCCCAAATAATGCAGGTGGATGGTGCAACCCTCCCCTTCAACATTTCGACCTTTCCCAACCTGTCTTCCAGCAAATTGCTCAATACAGAGCTGGAATAGTGCCCGTGGCTTACCGAAGGGTCCCTTGCCGAAAGAGAGGGGGCATCAGATTCACCGTCAACGGCCACTCATACTTCAACCTAGTCCTAATTACCAACGTTGGAGGTGCTGGTGATGTTCACGCAGTTTCCATCAAAGGTTCAAGAACTAACTGGCAACCAATGACTAGAAACTGGGGTCAGAACTGGCAAAGCAACACCTACCTCAATGGACAAAGCCTCTCCTTCAAGGTTACCACTAGCGATGGACGCAGTGTGGTCTCTTATAATGTTGCACCCGCAAGCTGGTCCTTTGGCCAAACCTTCACTGGCCATCAATTCATTTGA 747 0.4953 MALLGLLLVGFLSLGSSVSASGYGWMNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCVNDKRWCLPRSVVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQQIAQYRAGIVPVAYRRVPCRKRGGIRFTVNGHSYFNLVLITNVGGAGDVHAVSIKGSRTNWQPMTRNWGQNWQSNTYLNGQSLSFKVTTSDGRSVVSYNVAPASWSFGQTFTGHQFI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2098 248 PANTHER EXPANSIN 7 247 - -
Ssu1g2098 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Ssu1g2098 248 Gene3D - 155 247 IPR036749 -
Ssu1g2098 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Ssu1g2098 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Ssu1g2098 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Ssu1g2098 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Ssu1g2098 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Ssu1g2098 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Ssu1g2098 248 Gene3D - 13 151 IPR036908 -
Ssu1g2098 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Ssu1g2098 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Ssu1g2098 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Ssu1g2098 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Ssu1g2098 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Ssu1g2098 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Ssu1g2098 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Ssu1g2098 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Ssu1g2098 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Ssu1g2098 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Ssu1g2098 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Ssu1g2098 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Ssu1g2098 248 SMART dpbb_1 60 145 IPR007112 -
Ssu1g2098 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Ssu1g2098 248 PANTHER EXPANSIN-A15 7 247 IPR002963 GO:0009664
Ssu1g2098 248 SUPERFAMILY Barwin-like endoglucanases 24 173 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2098 Ssu-Chr1 59786414 59788616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2098 1 247 Expansin Gene Family AT2G03090 80.162 1.76e-151 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2098 - K20628 gmx:100799075 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2098 1 59786414 59788616 Ssu6g1250 6 20326958 20330194 ECH
Ssu3g0448 3 10242972 10244079 Ssu1g2098 1 59786414 59788616 ECH
Ssu8g2293 8 59932052 59933496 Ssu1g2098 1 59786414 59788616 ECH
Ssu2g1578 2 63511984 63514639 Ssu1g2098 1 59786414 59788616 ECH
Ssu1g2098 1 59786414 59788616 Ssu1g2098 1 59786414 59788616 ECH