Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2094 ATGGAAAACGTTTCAGTTGTGTGTAAGGAAGAGGATCAGATGGATTTGCCGCCTGGGTTTAGGTTTCACCCAACTGATGAAGAGCTTATTAGTCATTACCTTTACAGAAAGGTTACTGACACTAAATTCTCTGCCAGGGCCATTGGAGAGGTGGACTTAAACAGGTCTGAGCCTTGGGATTTGCCAAGGAAGGCCAAATTTGGAGAGAAAGAGGGGTACTTTTTCTGTGTGAGAGACAGGAAATACCCTACTGGCTTGAGGACCAACAGGGCCACTGAAGCAGGATACTGGAAGGCCACAGGGAAAGACAGAGAGATATTCAGAGGGAAATCTCTTGTGGGAATGAAGAAAACTTTGGTTTTCTACAAAGGAAGGGCACCCAAGGGAGAGAAAACCGATTGGGTCACGCATGAATATAGACTTGAGGGTAAATTCTCTGCTCACAACCTCCCCAAAACTGCAGAgAACGAGTGGGTAATTTGTAGGGTGTTTCAGAAGAGTTCAGGTGTCAAGAACACTCATATTTCTTCTGGGATAATGATGTTGGACTCTTTTGGAAACGAATTGGGTTCTTCTGGTTTGCCACCTCTCACTGATTCCTCACCTTCCATTGGCAACACCAAAGCACCGAGTGTGACTGAATCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCCAAGAGGGATCTTTGATTCCTTGAGCAACATCAACATCCTCAACAACAACACCACCCTTTATGGGGTTTCTTCAAACCAGTCATTCTACTCCACTCAAGAGGTTCAACTTCATGCTTCACCAACTTTGCCATTTCCCGGTTCTTCAAACCATTACCTTAGAGCCCTCATTGATAACCAGGGAAATGGATCAAACTTGAGGAAGGGTTTTGAAGTACCAGATGGGGATATGGCCAGTGTCTCGCAGGAAACAGGTGTTTCTACTGATGTGAACGCTGAAATCTCTTCGGTGGTGTCAAATCTTGATCATATGGGTAAAAGGCACTTTGAGAATCAGCACAACGCAATTGCTTCAGCTGCACCAATGGACCTTTCTAGCTTGTGGAACTACTGA 1074 0.4516 MENVSVVCKEEDQMDLPPGFRFHPTDEELISHYLYRKVTDTKFSARAIGEVDLNRSEPWDLPRKAKFGEKEGYFFCVRDRKYPTGLRTNRATEAGYWKATGKDREIFRGKSLVGMKKTLVFYKGRAPKGEKTDWVTHEYRLEGKFSAHNLPKTAENEWVICRVFQKSSGVKNTHISSGIMMLDSFGNELGSSGLPPLTDSSPSIGNTKAPSVTESAYVPCFSNPIDVPRGIFDSLSNINILNNNTTLYGVSSNQSFYSTQEVQLHASPTLPFPGSSNHYLRALIDNQGNGSNLRKGFEVPDGDMASVSQETGVSTDVNAEISSVVSNLDHMGKRHFENQHNAIASAAPMDLSSLWNY 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2094 357 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Ssu1g2094 357 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Ssu1g2094 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 6 353 - -
Ssu1g2094 357 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Ssu1g2094 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 353 - -
Ssu1g2094 357 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2094 Ssu-Chr1 59637514 59638999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2094 14 357 NAC Transcription Factor Family AT5G07680 55.814 1.28e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu1g2094 NAM 2.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2094 - - gmx:547650 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2094 1 59637514 59638999 Ssu6g1249 6 20292244 20293446 ECH
Ssu1g2094 1 59637514 59638999 Ssu1g2094 1 59637514 59638999 ECH