Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2093 ATGGGAAGGACTCCTTGCTGCAGTCATGAGGAATTGAGAAAAGGTGCATGGATGGTTCAAGAAGACCAGAAACTAGTAGCTTACATTCAGAAACATGGCACAGGAAGCTGGCGCACCCTGCCACAGAAAGCTgGTCTTCAAAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAACTACCTCAGACCTGACATTAAGAGAGGAAAATTAAGCCAAGAAGAAGAGCAGACAATTATAAAACTTCACGCGGTTCTTGGTAACAGGTGGTCTAGTATTGCAAAGCACTTACCAATGCGAACAGACAACGAAATCAAGAACTATTGGAACTCATATCTGAAAAAGCATTTCGAAAAGAAAGTTGTGGATCCCGTGAGTCCGAAACCAGTTAGCACTGATAGTTCCACAGAATCAAAATCTAATGACTTGTGCATGGTTCCATACAAGAAAACAGCATGCCATGGACCAAACGCCACTACACGCCAATCTCATCCACACAGCTTATCAAAGTCAATGTCATCTTCAACCCAGCTTCTCAACAAAGTTGCTAGTAAAATTCTGGCATCTGGGTACCTTGAAGCAATTAAATCATGCCAACCTGTTGTTGCTGGGAAGAGCAATAGTGAAAGTGTGGTTAAAACTGGAATTGGGTTAGAAAAGGACAATGTTACAGAGCCCCTTGTGCCTAATTTGACCTCTAGTCATTCATCAACTTCTGCTCAGTTACTGAACAAGATGGCTACTTCTCTCCCTCATAAAGTCCGTGGCCTTGGAGCTGCAAAAGCTGTTTTTTCGAAATTGATGGAAAGTGGTGAAAAAGGTGAGACTACTAGTGATGGCAGCTTTATTGGCAGTGATGAAGTTGGAGGTTGTTTAAATGCTTTAAGCCATTTTGAGGACGGACCACACATAACAAAAGTAATTGGCTCCCCTTCTAGTCCTACATTAATGTTCAATCAGGTGACCACACCCTCGTGCTTTTCAGATAATGAAGATAATTGGCAATGCGTTTCATCTAATTGCGTTTCCTTCAGAAATTGTGCTGCGAGTGGGGGTGACTGCGGTGTATCTGAAATCAACTTGGGTGAGTCTTCTAGCTCCACGTCGTGCTTCCTGTTTGAGGACGCTGATCTTGGAACGTGTGATGATGAGATAAGTAAGTACATTCAGTATTTGTAA 1176 0.4269 MGRTPCCSHEELRKGAWMVQEDQKLVAYIQKHGTGSWRTLPQKAGLQRCGKSCRLRWFNYLRPDIKRGKLSQEEEQTIIKLHAVLGNRWSSIAKHLPMRTDNEIKNYWNSYLKKHFEKKVVDPVSPKPVSTDSSTESKSNDLCMVPYKKTACHGPNATTRQSHPHSLSKSMSSSTQLLNKVASKILASGYLEAIKSCQPVVAGKSNSESVVKTGIGLEKDNVTEPLVPNLTSSHSSTSAQLLNKMATSLPHKVRGLGAAKAVFSKLMESGEKGETTSDGSFIGSDEVGGCLNALSHFEDGPHITKVIGSPSSPTLMFNQVTTPSCFSDNEDNWQCVSSNCVSFRNCAASGGDCGVSEINLGESSSSTSCFLFEDADLGTCDDEISKYIQYL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2093 391 CDD SANT 16 61 IPR001005 -
Ssu1g2093 391 Gene3D - 70 141 - -
Ssu1g2093 391 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Ssu1g2093 391 SMART sant 66 114 IPR001005 -
Ssu1g2093 391 SMART sant 13 63 IPR001005 -
Ssu1g2093 391 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu1g2093 391 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu1g2093 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu1g2093 391 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu1g2093 391 CDD SANT 71 112 IPR001005 -
Ssu1g2093 391 PANTHER TRANSCRIPTION FACTOR MYB51 1 209 - -
Ssu1g2093 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu1g2093 391 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 209 - -
Ssu1g2093 391 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu1g2093 391 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2093 Ssu-Chr1 59578778 59580636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2093 1 191 MYB Transcription Factor Family AT5G07690 50.739 7.96e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g2093 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2093 K09422 - gmx:100818639 648.277