Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2087 ATGGAGTCTGaggaaattaatttgaatatagaaAGTGGTGGTGGGAATAACGGTAAGAGTGGCGATGGGTTCATTGATAGGAGTAAGGTGCGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCTGAAGAGGTTTTTACGCTTCTTTTGAGGTGTTCTTATCAGGTTACCTCAGTAAAATCGGCAAGACAGGTAATTGATGCACTGAATGCAGAGGGGAAACATATAGATATTATACTGGCCGAACTTGACCTTCCGATGAAGAAGGGCATGAAGATGTTAAAGTACATAACACGGGATAAAGAGTTACGCAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCactaatgaactattaaatttgTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTGGTAGAGAAGAACATCTTGAATTACGATTTTGATCTTGTAGCATCAGACCCTAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTAATCCAGAGCCGGGAATATCAGTCCAACAAGAGCAAGAGTCGAATATTGCAATTGCTTCTGCTGTTGAGGAACCTCCAGCTGCTCATGCATCAGAACATCAGCCTGATGTGGATGGAGTTAATGATCACCGAACAGGTGtgcttcttttcttaatttcacCTTTCTTTAAAAGCCACAAATTGTATGttgattttgtgataaaaatGAAGTTATACAGTGTACCAACTAGTTGTGCATATGATTGTGAGAACTTGTTTTGA 852 0.3908 MESEEINLNIESGGGNNGKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLRCSYQVTSVKSARQVIDALNAEGKHIDIILAELDLPMKKGMKMLKYITRDKELRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYDFDLVASDPSDANTNSTTLFSDDTDDKSKRSTNPEPGISVQQEQESNIAIASAVEEPPAAHASEHQPDVDGVNDHRTGVLLFLISPFFKSHKLYVDFVIKMKLYSVPTSCAYDCENLF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2087 283 Pfam Response regulator receiver domain 32 143 IPR001789 GO:0000160
Ssu1g2087 283 ProSiteProfiles Response regulatory domain profile. 31 149 IPR001789 GO:0000160
Ssu1g2087 283 MobiDBLite consensus disorder prediction 178 209 - -
Ssu1g2087 283 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 242 IPR045279 GO:0009736
Ssu1g2087 283 Gene3D - 30 235 - -
Ssu1g2087 283 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 4 242 - -
Ssu1g2087 283 SUPERFAMILY CheY-like 26 155 IPR011006 -
Ssu1g2087 283 SMART REC_2 30 145 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2087 Ssu-Chr1 59438600 59442600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2087 19 216 Response Regulator Gene Family AT5G61380 81.313 5.21e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu1g2087 Response_reg 6.2e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2087 K12127 - gmx:100799728 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2087 1 59438600 59442600 Ssu1g2087 1 59438600 59442600 ECH