Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2086 ATGTATCATCAAAAGAATATCCAGGACCTACAGAATCATCCTAGTACAGCTATGATTGCACAGTACAATCATCTTCCCCAAGGCGGTCCTCATGGAACAGGGATGACATCCTTCCCATACTACCCAATGAGCATATGCTTACAACCTGGTCAGATTCCTACCCCTCATTCATGGCCATCATTTGGAAGCTCAAGTTTGTCAGAAGCAAAAATAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTCAGACAGAAAAGGAAAGAGCGTTGCTTTGATAAGAAAATTAGGTATGTTAACCGGAAACGACTTGCTGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCAGAAAGTTGAACAGTGCTAATGTGGATCTCAATGGACAGCCCACCTCAATTGActatgatgaagatgatgaagaggatgaagatgaCCAGGGAGCAAGAGATTCTTCTCCCGAGGATGCTTGA 474 0.4114 MYHQKNIQDLQNHPSTAMIAQYNHLPQGGPHGTGMTSFPYYPMSICLQPGQIPTPHSWPSFGSSSLSEAKISKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNSANVDLNGQPTSIDYDEDDEEDEDDQGARDSSPEDA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2086 157 MobiDBLite consensus disorder prediction 114 157 - -
Ssu1g2086 157 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 3 137 - -
Ssu1g2086 157 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 137 IPR045279 GO:0009736
Ssu1g2086 157 MobiDBLite consensus disorder prediction 133 157 - -
Ssu1g2086 157 Pfam CCT motif 77 119 IPR010402 GO:0005515
Ssu1g2086 157 ProSiteProfiles CCT domain profile. 77 119 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2086 Ssu-Chr1 59437372 59437845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2086 2 156 Response Regulator Gene Family AT5G61380 52.381 1.67e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu1g2086 CCT 4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2086 K12127 - gmx:100271889 293.508