Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2084 ATGAGGGGTGGGAGGAGGAGCATGATAAGGCTTCAGTTTAGCAAGATCTATTCATTTGCTTGTGGTGAAACAACCTTCCAGAGAGATCATTCGCGTATCGGGGGACATGGTCATTCCAGAGTGGTTTTGTGCAATGAACCAGGTGGATTTGAGGGAGGGGTCTTCAATTATGCTGATAATTCTGTTAGGTCCACAAAATACACTGTTGCCACTTTCTTGCCCAAGTCACTGTTTGAGCAGTTTAGGAGGGTGGCTAACTTCTATTTCTTGGTGGCTGGCATCTTAGCCTTCACAAAGCTTGCTCCCTATACTGCTGTCAGTGCTATCCTTCCTCTGTCTATCATCATTGGGGCAACTATGGTGAAAGAGGGTATTGAAGATTGGCGCCGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGTTATATTGCATAAAGGTGACGGCATTTTTGAATATACTGAATGGAAGAATCTCAGAGTAGGGAATATAGTGAAGATAATGAAGGATGAATTCTTCCCTGCTGACCTCCTACTGCTTTCCTCCAGTTATGAGGATGCAGTCTGCTATGTTGAGACTATGAACTTGGATGGTGAGACGAATTTGAAGTTAAAACAAGGGTTGGATGTAACTTCTTCCTTACATGAGGACTTCAAATTCTGTGATTTTAGAGCTGTCATCAAATGTGAAGATCCAAATGCAAATTTGTATTCATTTGTTGGGAGCATGGAGTTTGGAGAGCAAAAATATCCCCTTTCTGCTCAGCAACTTCTTCTGAGAGACTCTAAACTTCGTAATACAGACTACGTGTTTGGAGCAGTCATCTTTACTGGTCATGACACGAAGGTTATTCAAAACTCCACTGATCCCCCTTCCAAAAGAAGCAAGATTGAGAAGAAGATGGATAAGATTATCTACTTCttgttttgtgttttatttctaATTGCATTTGTTGGATCCATTCTCTTTGGCATTGCAACCAAAGGTGACCTGGACAATGGGTTAATGAAAAGATGGTATCTAAGACCAGATAGTTCCACAATTTTCTTTGATCCTGAAAGAGCAGCTGCAGCTGCTATATTTCATTCTTTAACAGCCTTAATGTTATACAACTTCTTCATTCCTATCTCCTTGTATTTCTCAATTGAGATTGTCAAAGTCCTTCAGAGCATCTTCATCAATCGAGATATCCACATGTACTATGAAGAAGCAGACAAACCAGCTTGTGCCCGTACTTCAAACTTGAATGAGGAACTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCTGTTGCTGGGGTAGCTTATGGTTGTGGTGTGACAGAGGTTGAGCAAGCCATTGGTAGAAGTAATGGTTCACCTATTCTTCATGACCATATTAATAGATTTGAATCAACATCAAATGAAATCAGGGACTCTCCTGATAGAAAAGAACCTATAAAAGGTTTTAACTTTACAGATGAAAGGATAATGAATGGAAACTGGGTTAATGAGCCTCATGCAGATATTATCCAGAAATTTTTTCGCTTATTGGCAATTTGTCATACTGCCATACCAGAAGTGGATGAAGAAACAGGAAATGTCTCATATGAGGCTGAATCTCCAGATGAAGCAGCATTTGTTATTGCTGCAAGAGAAGTTGGTTTTAAATTCTACAAAAGGACTCAGACTTGTTTGTCAATGTATGAGTTGGATCCAGTTTCTGGCAATGAAGTTGAAAGGACGTACAAGCTTCTTAATGTTTTAGAATTCAATAGCTCAAGAAAGCGGATGTCGGTGATAGTGAAAGATGAAGAAGGGAGAATTTTTCTGCTTTGTAAAGGTGCTGACAGTGTTATGTTTGAAAGGCTTGCCAAGAATGGAAGGAAGTTTGAAGAGAAAACTCTGGAACATGTGAGTGAATATGCCGATGCAGGTCTAAGGACCCTAATACTGGCCTATTGCGAACTTGATGAAGAAGAATACACGGAGTTTGATGATAAATTTTCTGAAGTAAAAAATTCAGTCGCCGTAGATCGGGAAACACTGATTGAAGAAGTATCGGATAAGATTGAGAGGAATCTAATCCTTCTGGGTGCCACTGCTGTAGAGGACAGGCTCCAAAATGGGGTTCCTGATTGTATTGACAAGCTTGCACAAGCTAAGATTAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACTGCCGTCAATATTGGTTTCTCTTGTCGTTTGCTTAGGCAAGGAATGAAACAGATTATAATTCATTTGGAGATTCCGGAAATTCAAGCATTGGAGAAGGTTGGAGAAAAGATGGCTATTGccaagGCATCAAGGGAAAGTGTGCACCATCAGATATCTGAAGGTGCTCAACTGCTTTCTGCATCCAGAGGAACCTGCCAGCAGACATTTGCTCTGATAATTGATGGAAAATCACTTACTTATGCTCTAGAGGATAATATGAAGAACATGTTTCTAGAGCTTGCAAGTCATTGTGCATCTGTTATCTGCTGTCGCTCATCGCCGAAGCAGAAGGCTCTGGTTACTAGGCTGGTCAAATCTGGAACTGGTAAAACAACATTAGCTATTGGTGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCAGATGTAGGGATTGGAATCAGTGGTGTTGAAGGGATGCAGGCCGTCATGTCTAGTGATATTGCAATTGCACAGTTCCGGTATTTGGAAAGGTTACTTCTTGTACATGGACATTGGTGTTACCGGAGGATGTCATCAATGATATGCTATTTTTTCTACAAGAATATCACATTTGGCTTCACTCTATTCCTGTATGAGGTTTATGCATCATTCTCTGGACAGCCTGCATACAATGACTGGTTTTTGTCTCTCTATAGTGTCTTCTTTTCATCACTTCCTGTGATTGCCCTTGGGGTCCTTGACCAGGATGTATCTGCCAGGTACTGCCTGAAGTTTCCTATCCTATACCAAGAAGGTGTGCAAAATGTCCTCTTCAGCTGGCGTCTAATACTTAGCTGGATGCTTAATGGATTTATTAGTGCCACAATGATATTCTTCTTCTGCACAAAAGCAATTGAGCCTCAGGCCTTTGATGAGGAGGGAAGAACTGCTGGAAGGGATATGCTGGGCATGACGATGTATACTTGTGTGGTTTGGGTTGTGAACTTACAGATGGCGCTTGCTATCCATTACTTCACCTTGATACAACATATTTTCATCTGGGGTTCCATTGCTTTCTGGTATCTTTTCCTCCTGGCATATGGGGCAATGCCTCCAATCATTTCTACAAATGCTTACAAAGTCTTCATTGAAACTCTTGCCCCGTCTCCTTCCTTTTGGGTTGTGACATTCTTTGTGGCGATCTCAACACTTATCCCATACCTCTCATGCTCAGTAATTCAGATGTGGTTCTTCCCCATGTATCACCAAATGGTACAATGGATAAGGTATGAGAGGAAGACAATTAATCTTGAATAG 3504 0.4075 MRGGRRSMIRLQFSKIYSFACGETTFQRDHSRIGGHGHSRVVLCNEPGGFEGGVFNYADNSVRSTKYTVATFLPKSLFEQFRRVANFYFLVAGILAFTKLAPYTAVSAILPLSIIIGATMVKEGIEDWRRKKQDIEVNNRRVILHKGDGIFEYTEWKNLRVGNIVKIMKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLDVTSSLHEDFKFCDFRAVIKCEDPNANLYSFVGSMEFGEQKYPLSAQQLLLRDSKLRNTDYVFGAVIFTGHDTKVIQNSTDPPSKRSKIEKKMDKIIYFLFCVLFLIAFVGSILFGIATKGDLDNGLMKRWYLRPDSSTIFFDPERAAAAAIFHSLTALMLYNFFIPISLYFSIEIVKVLQSIFINRDIHMYYEEADKPACARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGVAYGCGVTEVEQAIGRSNGSPILHDHINRFESTSNEIRDSPDRKEPIKGFNFTDERIMNGNWVNEPHADIIQKFFRLLAICHTAIPEVDEETGNVSYEAESPDEAAFVIAAREVGFKFYKRTQTCLSMYELDPVSGNEVERTYKLLNVLEFNSSRKRMSVIVKDEEGRIFLLCKGADSVMFERLAKNGRKFEEKTLEHVSEYADAGLRTLILAYCELDEEEYTEFDDKFSEVKNSVAVDRETLIEEVSDKIERNLILLGATAVEDRLQNGVPDCIDKLAQAKIKIWVLTGDKMETAVNIGFSCRLLRQGMKQIIIHLEIPEIQALEKVGEKMAIAKASRESVHHQISEGAQLLSASRGTCQQTFALIIDGKSLTYALEDNMKNMFLELASHCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADVGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRMSSMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYSVFFSSLPVIALGVLDQDVSARYCLKFPILYQEGVQNVLFSWRLILSWMLNGFISATMIFFFCTKAIEPQAFDEEGRTAGRDMLGMTMYTCVVWVVNLQMALAIHYFTLIQHIFIWGSIAFWYLFLLAYGAMPPIISTNAYKVFIETLAPSPSFWVVTFFVAISTLIPYLSCSVIQMWFFPMYHQMVQWIRYERKTINLE 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2084 1167 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 8 1164 - -
Ssu1g2084 1167 SFLD p-type atpase 408 921 IPR044492 -
Ssu1g2084 1167 Pfam Cation transport ATPase (P-type) 537 631 - -
Ssu1g2084 1167 Gene3D - 113 289 - -
Ssu1g2084 1167 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 8 1164 - -
Ssu1g2084 1167 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Ssu1g2084 1167 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 842 952 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g2084 1167 SFLD C1.7: P-type atpase like 408 921 - -
Ssu1g2084 1167 SUPERFAMILY HAD-like 414 914 IPR036412 -
Ssu1g2084 1167 Gene3D - 705 910 IPR023214 -
Ssu1g2084 1167 SUPERFAMILY Calcium ATPase, transduction domain A 144 285 IPR008250 -
Ssu1g2084 1167 Pfam Phospholipid-translocating ATPase N-terminal 55 108 IPR032631 -
Ssu1g2084 1167 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Ssu1g2084 1167 PRINTS P-type cation-transporting ATPase superfamily signature 870 889 - -
Ssu1g2084 1167 CDD P-type_ATPase_APLT_Dnf-like 59 1030 - -
Ssu1g2084 1167 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 1148 IPR023298 -
Ssu1g2084 1167 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 498 674 IPR023299 GO:0000166
Ssu1g2084 1167 Pfam Phospholipid-translocating P-type ATPase C-terminal 898 1148 IPR032630 -
Ssu1g2084 1167 Gene3D - 545 704 IPR023299 GO:0000166
Ssu1g2084 1167 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1155 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2084 Ssu-Chr1 59401225 59410705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2084 3 1160 Primary Pumps ATPases AT1G68710 72.330 0.0 1800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2084 K01530 - gmx:100798329 2187.15