Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2083 ATGAAATTTGATGCCTATACAATGTCTTTCCAATGCTTGCCTTTGTCATTATTTATTCAGGCAATCAACTTTTACTCAAGAGCCAATACCATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCCAATATTTCATGCACAGAACACCATCATCTTCAGAACGTAGGCCATTGAGTGGACTTGAACCCACAACACTTGCAGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGAACTCCAAAGTAATTCTGCAAAATCATATCTTTTAAAGGCCAATGCTCTTCTCCTGTTAGAGAAATATGAGAAAGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATTTGGAAAGAGTGTCATCTAGTTCAACAGGGATGAGTACACGTGGACAACCAGAACGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTGTCTCTATGAACCTGTCACAACCGCTTGTGGACATTCTTTTTGCCGTTCATGTCTATTTCAGTCAATGGATTCTGGAAACAGGTGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGTGTGACATTGAAAAACATCATACAAAAGAACTTTCCTGAGGAATATGCAGAAAGGAAGCTAGAGCATGATGGTTTAATCAACGCTGGTGTAGATTTACTCCCTCTTTTTGTCATGGATGTTGCCATACCATGTCAAAGATTTCCACTCAATATATTTGAACCTCGGTATAGACTCATGgTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATGCTTGATTCTTCAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACAGAgTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAGGTCGCAGGAGATTTCGTATCATCCGCTCGTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATGCCACCAGAAGGGACAGGAGACAGAGAGACTTTACAGGAACTGACATATAATGCAGCCGAAAGTGCTCGATCATGGATAGAAAGAGCTAAAGAAGCAGCAAGGCATGATCAAAGAAGACTTGAGAGACTTGCCAGTGTTGAAGTAATGATGCCTTCACTAAAAGATCCTGAGCGCTTTAGTTTTTGGCTGGCTACCCTCTCCAATCGGAGGCCTCCGGAAAGATTAGATCTCCTACGCATAAGAGACACCACCGAGAGGATTAGACGAGGCCTGATATTTCTCCGACAAGGCTGCAGAACTCAGTAA 1344 0.4204 MKFDAYTMSFQCLPLSLFIQAINFYSRANTIKSGDPIILSNRSAAYIRISQYFMHRTPSSSERRPLSGLEPTTLAELGLKDAEKLVELQSNSAKSYLLKANALLLLEKYEKARDVILSGLQVDPFSNSLRASLQNLERVSSSSTGMSTRGQPERNDDFDCTLCLKCLYEPVTTACGHSFCRSCLFQSMDSGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKLEHDGLINAGVDLLPLFVMDVAIPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMAMLDSSTGSLAEFACEVEITECEPLPDGRFYIEIEGRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTGDRETLQELTYNAAESARSWIERAKEAARHDQRRLERLASVEVMMPSLKDPERFSFWLATLSNRRPPERLDLLRIRDTTERIRRGLIFLRQGCRTQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2083 447 Gene3D Tetratricopeptide repeat domain 15 147 IPR011990 GO:0005515
Ssu1g2083 447 Gene3D - 242 344 IPR046336 -
Ssu1g2083 447 ProSiteProfiles Zinc finger RING-type profile. 160 198 IPR001841 -
Ssu1g2083 447 PANTHER RING FINGER PROTEIN 127 16 441 - -
Ssu1g2083 447 SMART ring_2 160 197 IPR001841 -
Ssu1g2083 447 SUPERFAMILY RING/U-box 155 223 - -
Ssu1g2083 447 ProSitePatterns Zinc finger RING-type signature. 175 184 IPR017907 -
Ssu1g2083 447 ProSiteProfiles Lon N-terminal domain profile. 241 442 IPR003111 -
Ssu1g2083 447 Gene3D - 372 443 - -
Ssu1g2083 447 SMART lon_5 243 442 IPR003111 -
Ssu1g2083 447 SUPERFAMILY TPR-like 18 132 IPR011990 GO:0005515
Ssu1g2083 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 238 IPR013083 -
Ssu1g2083 447 SUPERFAMILY PUA domain-like 244 440 IPR015947 -
Ssu1g2083 447 Pfam Zinc finger, C3HC4 type (RING finger) 160 197 - -
Ssu1g2083 447 Coils Coil 372 392 - -
Ssu1g2083 447 Pfam ATP-dependent protease La (LON) substrate-binding domain 244 441 IPR003111 -
Ssu1g2083 447 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 16 441 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2083 148 201 C3H Transcription Factor Family AT1G74990 33.333 2.40e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2083 - - gmx:100802277 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2083 1 59345994 59354159 Ssu1g2083 1 59345994 59354159 ECH