Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2080 ATGGCTCTCTTCCGAAGGTTCTTTTACCGGAAACCGCCGGATCACCTTCTCGAGATCTCCGACAGAGTCTATGTTTTTGATTGTTGCTTCTCCAAGAATGTGTTGGAGGAGGAGGAGTACAAGGTTTATGTTGGGGGAATTGTGGCTCAGCTACAGGATCACTATCCGGATGCTTCATTCATGGTGTTCAATTTCAGAGAAGGGGATAGGCGGAGTCGAATTTCAGACGTTATGTCTCAGTATCAGATGACAGTTATGGAGTACCCTCGGCAATACGAGGGTTGTCCACTTCTGCCCTTGGAGATGATTCATCACTTCCTTCGGTCAAGCGAGAGCTGGCTGTCTTTGGAGGGGCAACAAAACGTGCTTTTGATGCACTGTGAAAGGGGTGGTTGGCCTGTGCTGGCATTTATGCTGGCTGGTCTTCTATTGTACCGGAAACAGTACAATGGGGAATATAAGACTCTTGAAATGGTGTACAAGCAAGCACCTAGAGAACTTCTCCACCTTTTATCTCCTTTAAACCCACAGCCTTCTCATTTGAGATATCTTCAGTACATTTCCAGGAGGCATTTGGGTTCTGAGTGGCCTCCATCAGACACACCCTTACATTTGGATTGCCTCATTCTTAGAGTCCTTCCATTATTTGATGGTGGAAAAGGTTGCAGGCCTGTTGTGCGTGTCTATGGTCCAGACCCTTCCAAACCTGTCAACAGAAGTTCTAAGCTTCTTTTCTCAACTTCAATGACCCAAAATCATGTTCGCCACTACCTGCAGGCAGAATGTATGCTCGTGAAAATTGACATCCATTGTCATGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAGTGAAGATTTTGTTCGTGAGGAGATGATGTTTAGAGTCATGTTTCATACTGCGTTTGTACGGTCAAATATATTGATGCTGAGCCGTGATGAAATCGATATTTTGTGGGATGCAAAGGATCAATTCCCCAAGGAGTTCAAATCTGAGGTGCTTTTTTTGGACGCTGATGCTGTTATGCCTAATCTAACCACAGTCAATGTGAGTGGAGATGCAAATGACACAGAATGTGCTTCACCTGAGGCTGAGGAATTCTATGAGGCAGAAGAGATCTTCAGCAATGTTATTGATGCACAGGAAGGTAAGGGGGATTACGATTCTACAATGGTTCATGACAATGGAGTAGATGATGGAAGTCATAAAGAGGTCTGGAAAGAGTATTCAGATTCTCATACTTTTCAGGATTCCATGTTAGATGATGGGATTCACCAACAGGTTGATGATGTGAAGTACAAGCTTGACGAGAGGGTGTTTTCAGATACTCATGCTGTGAAAGATATTTCTGTGGATGATGTATTTACTCTTCATATGTTGAAAACTCTGGAGACAAAGGAAGTCACTGTGGATGCGCATGATGAGTTGGCAGTTATGCAAAACAAGAATGATGAAGATAACAATGAAACAGAAAGAGAATTTGAGTCAGAGGAAGGGCAGCAGATGCTTGATCTTTCCAGACCAAAATCTGATAAATTACTTCCTTCTGCTGAAAAGAAACAACTTCCTTCAAACTCAAAGCCTGTAGGAGATACAGTTGTAGCAAAGCAAAAGACTAAACACCAAGAACCACATGGTTTTCAGGCAAAACAAGTAAAACCCAATTCAACAACTAGCTGGATTCCTTCTAACAAGGGTTCTTATCAAGATTCAATGCATGTCTCGTATCCACCATCAAGGAATAATAACTCACCAGCTACTCTGTCAAATGTTACCTCTGCAAAGGAGAAAATTACTGATGCTGAAGGAAAATCTAGTTCTCATGTCTCTGAAGCAATTGTTTCTATGGACATGACAAATGACCTGAAAAGCTGTAATGCGgataatttaaaatcttcaGACAGCACATCTGAAATAGACTCAAACTCTCCACTATCATCATTACTGTCACTCAAAGAGACATCTCTTCAGTCAGCTACTCAAGAAACAGAACAGAGCTACGATCAAATGTTACCACTTCAtcctccacctcctcctccacctccATTTTTTGGGCAAAATAGAGAGAACTTCTTAACTCCTTCTACCCGTTCAAAATCTGTTTATTCATCCATTGCCATAGTTGGACAAAATAATGGAGCTTTACCTCCTCCTCCTGCTCCTCCCATTGCAAGTAGTGCAATTACATCAAAAGTTTCTGAATTACTCGGTGCAGTTTCCCTTCCGTGTCCtccaccacctcctcctcctcctcccctTCCTTCAAAATATGGAGTTACATCCATTCCTTCTCCTCCTGCTTGTCCCCCTCCTCCTCCTATGTCGTCTACAAATGGAGCTCCACTCGCTCCTCCCTCAATATCTCCCACATCATCTAAAGCTCCACCTCCTGCATCCCCACTGCCACATCCACCTCCACATTCTTTAAGTAACTCTCAACCACTTCCTTCTCCTCTGTTAAGTActactccaccaccaccaccacctcctcctTTATGCAGAGCTCCACCTCCACCACAGTCTCTTCCTCCATCAAGTGGAGCACCACCTCCGCCACCACCTCCTTCATTGTCTAGAACTCCACCTCCACCAACTCGTggaccaccaccacctccaatGCATGCAGGCTCACCTCCTCCACCACCTTCAGGTGGCCGAGGCCCACCTCCTACTGGATCTCGGGCTCCTAGTGCTCCTGCTCCTCTTGGACATCTAGGTGGTGCTCCTGCTACTCCACCATCTGGAACTGATCCAAGAGGAAGAGGGCGTGGACTTGCACGTCCTACAGGAGCTGGTGCTATGGCAATTCGGCGATCCTCCTTAAAGCCTCTGCACTGGAGTAAGGTAACAAGGGCATTGCAGGGAAGTTTATGGGACGAATTACAAAGACGTGGAGAACCTCAAATAATACAAGAGTTTGACGTTTCAGAGATAGAGAAGCTTTTTTCTGCAAATGTTCCAAAATCTGCTGATTCCGATGGTAAATCTGGTGGTCGGCGCAGATCTGTTGGATCCAAAACTGACAAAATTCACTTGATTGACCTAAGGAGGGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCACTTCCTGATATGATGGCTGTAGTACTGGCTATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCTACCAAAGAGGAGATGGAGCTTTTGAAGGGATACACTGGTGATAAGGAGATTTTGGGGAAGTGTGAAAAGTATTTTTTGGAGCTGATGAAAGTGCCGAGAGTGGAGTCAAAATTCAGAGTATTCTCTTTCAAGATTCAGTTTGGGACTCAGATTACAGAGTTTAAGAAGAGTTTAAACACAGTGAACTCTGCCTGTGAAGAGGTCCGAAACTCATTCAAACTGAAGGAGATTATGAAGAAAATTCTTTATTTGGGTAATACGTTGAATCAAGGAACAGCAAGGgGATCTGCTGTTGGATTCAAGTTGGACAGTCTTTTAAAACTAACCGACACTCGGGCTTCAAACAGTAAAATGACACTCATGCATTTTCTTTGCAAGGTCCTAGCTGAAAGGTTTCCCGGACTCCTTGATTTTCACTTTGACCTTGTTAGCCTGGAAGCAGCCAGTAAgATACAATTGAAGTCATTAGCAGAAGAAATGCAGGCAATCATCAGGGGATTAGAAAAGGTTAAACAGGAGCTTGCTGCGTCTGAAAATGATGGCCCTGTGTCTGAAGTTTTTCATAAGACATTGAAGGAATTCATTACTGTTGCAGAGTCAGAGGTGGCATCTGTAACAAACCTATATTCTGTGGTGGGTAGAAATGCAGATGCACTTGCCCTATATTTTGGTGAGGATCCTGCCCGTTGTCCTTTCGAGCAAGTTACTGCAACTCTCTTAAATTTTACAAGGTTGTTTCTGAAAGCACATGAAGAGAATGGCAAACAAGCAGAATTAGAGAAGAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGGCTAAAGGCATTAACTTGACAAGGAAGAGTGGAAaagttgaagaagaagaaaaagaaaaagaaagctgA 4068 0.4169 MALFRRFFYRKPPDHLLEISDRVYVFDCCFSKNVLEEEEYKVYVGGIVAQLQDHYPDASFMVFNFREGDRRSRISDVMSQYQMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEYKTLEMVYKQAPRELLHLLSPLNPQPSHLRYLQYISRRHLGSEWPPSDTPLHLDCLILRVLPLFDGGKGCRPVVRVYGPDPSKPVNRSSKLLFSTSMTQNHVRHYLQAECMLVKIDIHCHVQGDVVLECIHLSEDFVREEMMFRVMFHTAFVRSNILMLSRDEIDILWDAKDQFPKEFKSEVLFLDADAVMPNLTTVNVSGDANDTECASPEAEEFYEAEEIFSNVIDAQEGKGDYDSTMVHDNGVDDGSHKEVWKEYSDSHTFQDSMLDDGIHQQVDDVKYKLDERVFSDTHAVKDISVDDVFTLHMLKTLETKEVTVDAHDELAVMQNKNDEDNNETEREFESEEGQQMLDLSRPKSDKLLPSAEKKQLPSNSKPVGDTVVAKQKTKHQEPHGFQAKQVKPNSTTSWIPSNKGSYQDSMHVSYPPSRNNNSPATLSNVTSAKEKITDAEGKSSSHVSEAIVSMDMTNDLKSCNADNLKSSDSTSEIDSNSPLSSLLSLKETSLQSATQETEQSYDQMLPLHPPPPPPPPFFGQNRENFLTPSTRSKSVYSSIAIVGQNNGALPPPPAPPIASSAITSKVSELLGAVSLPCPPPPPPPPPLPSKYGVTSIPSPPACPPPPPMSSTNGAPLAPPSISPTSSKAPPPASPLPHPPPHSLSNSQPLPSPLLSTTPPPPPPPPLCRAPPPPQSLPPSSGAPPPPPPPSLSRTPPPPTRGPPPPPMHAGSPPPPPSGGRGPPPTGSRAPSAPAPLGHLGGAPATPPSGTDPRGRGRGLARPTGAGAMAIRRSSLKPLHWSKVTRALQGSLWDELQRRGEPQIIQEFDVSEIEKLFSANVPKSADSDGKSGGRRRSVGSKTDKIHLIDLRRANNTEIMLTKVKMPLPDMMAVVLAMDDSVLDVDQVENLIKFCPTKEEMELLKGYTGDKEILGKCEKYFLELMKVPRVESKFRVFSFKIQFGTQITEFKKSLNTVNSACEEVRNSFKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHFLCKVLAERFPGLLDFHFDLVSLEAASKIQLKSLAEEMQAIIRGLEKVKQELAASENDGPVSEVFHKTLKEFITVAESEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFTRLFLKAHEENGKQAELEKKKAEKEAEMEKAKGINLTRKSGKVEEEEKEKES 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2080 1355 ProSiteProfiles Formin homology-2 (FH2) domain profile. 932 1333 IPR015425 -
Ssu1g2080 1355 MobiDBLite consensus disorder prediction 710 729 - -
Ssu1g2080 1355 Coils Coil 1339 1355 - -
Ssu1g2080 1355 Coils Coil 1308 1337 - -
Ssu1g2080 1355 Gene3D Formin, FH2 domain 951 1345 IPR042201 -
Ssu1g2080 1355 MobiDBLite consensus disorder prediction 606 669 - -
Ssu1g2080 1355 MobiDBLite consensus disorder prediction 739 931 - -
Ssu1g2080 1355 MobiDBLite consensus disorder prediction 479 697 - -
Ssu1g2080 1355 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 188 IPR029021 -
Ssu1g2080 1355 PANTHER FORMIN-J 839 1341 - -
Ssu1g2080 1355 PANTHER FORMIN-J 1 841 - -
Ssu1g2080 1355 MobiDBLite consensus disorder prediction 741 780 - -
Ssu1g2080 1355 MobiDBLite consensus disorder prediction 672 686 - -
Ssu1g2080 1355 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Ssu1g2080 1355 SMART PTEN_C2_2 198 338 IPR014020 -
Ssu1g2080 1355 Gene3D - 205 336 - -
Ssu1g2080 1355 MobiDBLite consensus disorder prediction 550 597 - -
Ssu1g2080 1355 MobiDBLite consensus disorder prediction 1315 1355 - -
Ssu1g2080 1355 Pfam Formin Homology 2 Domain 940 1307 IPR015425 -
Ssu1g2080 1355 MobiDBLite consensus disorder prediction 789 897 - -
Ssu1g2080 1355 SUPERFAMILY Formin homology 2 domain (FH2 domain) 851 1327 - -
Ssu1g2080 1355 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Ssu1g2080 1355 Gene3D Protein tyrosine phosphatase superfamily 13 204 IPR029021 -
Ssu1g2080 1355 MobiDBLite consensus disorder prediction 479 517 - -
Ssu1g2080 1355 Coils Coil 1214 1241 - -
Ssu1g2080 1355 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Ssu1g2080 1355 SMART it6_source 932 1355 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2080 Ssu-Chr1 59307906 59327529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2080 1 604 FH2 protein (formin) Gene Family AT5G07740 61.836 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2080 - - gmx:100779085 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2080 1 59307906 59327529 Ssu1g2080 1 59307906 59327529 ECH