Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2079 ATGGCGCGTGAGATAATGATTCTGCGACGGCTTGATCATCCCAATACCATAAAGCTTGAGGGTTTGATTACTTCGAGGTTGTCGTGTAGCATATACCTCGTGTTTGAGTACATGGAGCATGACATTACAGGGCTCTTGTCTTCCCCTGACGTCGAGTTCACCGAACCTCAgATTAAGTGCTACCTGAAGCAGTTGTTGGCTGGACTTGAACACTGTCACTTGCGGGGAGTGATGCACAGGGACATTAAGGGGTCGAATCTTTTGGTGAATAATGAAGGGGTTTTAAAGGTGGCGGATTTTGGGTTGGCGAATTATGTCAATTCTGGGCACAGGCAACCTCTGACTAGTCGTGTTGTCACCTTGTGGTACCGGCCGCCGGAGCTCTTGCTCGGTTCGACGGATTATGGTCCGGCCGTGGATCTTTGGAGTGTTGGCTGCGTGTTCGCGGAGGTGCTTGTTGGGAAGCCTATACTTCAGGGGAGAACGGAGGTTGAACAATTGCACAAAATTTTCAAGCTCTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCTCATGCAACTTTATTTAAGCCACAACAACCATATGATAGTTGCCTTCGGCAGTCCTTTAAAGATTTGCCAGCGACCAGTGTAAATCTGCTACAAACTCTTCTTTCTGTAGAACCATACAAACGTGGGACTGCCACATCTGCTCTCTCATCAGAGtatttcaaaacaaaaccttATGCGTGTGAGCCATCAAGCTTGCCGATATACCCACCTAGCAAGGAAATTGATGCAAAACACAGGGAGGAGTCAAGGAAAAAGATTAGTGGACGAGTTCGTGGAGCTGAAACAAGAAAACCATCAAGAAAGCCACTGGGATTCAACAAACTAGCCCCAGCTGAGGATTTGGCAAGTCAAACTCAGACTTCCCAAAAGGTCAATGGTAGATCTTTCCGCATCCTTGAAGTAGAGAAGACTAAAATAGGTGACAAAGCGCAAAAGCTGTCCAGTGGTAAACCTGAAGATGCTTCCCATATGAAGAATGCATCTCAAGGAGATATTCCCCCTTCTGGACCATTACAAGTTTCAACATCAAGTGGCTTTGCATGGGCAAAAGGCCGTAAAGATGACACTTCATTTCGATCCCATTGTCGAACTATTTCAAGAGGACATATTTTCAATCCATTAGAACCTTCTACATTAAATTCAAGGAATAATTTGGACACCGCAAACCAGGAAAATAAGGAGTTTTGTGGGGGATACACCAATTCTAGGGGCCATGACCTACTTGAAATTTCTAAGCTTTCAATGCAGAATCAGTGGAGTAAGTTTGATCGCCCAGATTCATTTGATGCTTCAGATGAGTACCACTCGCAAGAATTGTCTATGGCACTTTATCTCCGAGAAGATTCAGCATCCAAGAGAAGTAACCTGAGTTTTCAAGATCAAGGAGAAAAGGTTGAATTTTCTGGACCCCTACTATCTCAAATGCACACAGTTGATGAGCTCTTGGAAAAGCATGAGCGTCACATCCGGCAAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAAGCATCGGAAGTAA 1584 0.447 MAREIMILRRLDHPNTIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDVEFTEPQIKCYLKQLLAGLEHCHLRGVMHRDIKGSNLLVNNEGVLKVADFGLANYVNSGHRQPLTSRVVTLWYRPPELLLGSTDYGPAVDLWSVGCVFAEVLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRQSFKDLPATSVNLLQTLLSVEPYKRGTATSALSSEYFKTKPYACEPSSLPIYPPSKEIDAKHREESRKKISGRVRGAETRKPSRKPLGFNKLAPAEDLASQTQTSQKVNGRSFRILEVEKTKIGDKAQKLSSGKPEDASHMKNASQGDIPPSGPLQVSTSSGFAWAKGRKDDTSFRSHCRTISRGHIFNPLEPSTLNSRNNLDTANQENKEFCGGYTNSRGHDLLEISKLSMQNQWSKFDRPDSFDASDEYHSQELSMALYLREDSASKRSNLSFQDQGEKVEFSGPLLSQMHTVDELLEKHERHIRQTVRRSWFQRGKKHRK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2079 527 Pfam Protein kinase domain 2 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2079 527 MobiDBLite consensus disorder prediction 300 315 - -
Ssu1g2079 527 MobiDBLite consensus disorder prediction 255 315 - -
Ssu1g2079 527 SUPERFAMILY Protein kinase-like (PK-like) 2 246 IPR011009 -
Ssu1g2079 527 SMART serkin_6 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2079 527 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2079 527 Gene3D Transferase(Phosphotransferase) domain 1 40 279 - -
Ssu1g2079 527 MobiDBLite consensus disorder prediction 260 289 - -
Ssu1g2079 527 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 520 - -
Ssu1g2079 527 Gene3D Phosphorylase Kinase; domain 1 1 37 - -
Ssu1g2079 527 MobiDBLite consensus disorder prediction 349 367 - -
Ssu1g2079 527 MobiDBLite consensus disorder prediction 328 367 - -
Ssu1g2079 527 PANTHER CELL DIVISION PROTEIN KINASE 1 520 - -
Ssu1g2079 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2079 Ssu-Chr1 59282632 59288405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2079 3 300 Core Cell Cycle Gene Families AT5G10270 47.284 4.01e-95 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu1g2079 Pkinase 3.7e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2079 - - gmx:100803328 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2079 1 59282632 59288405 Ssu6g1234 6 20148335 20153912 ECH
Ssu1g2079 1 59282632 59288405 Ssu1g2079 1 59282632 59288405 ECH