Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2077 ATGTCGGACGAAGAGCACCATTTCGAATCCAAGGCCGATGCCGGAGCCTCCAAGACCTATCCCCAGCAAGCCGGCACCATTCGCAAAAACGGCCACATCGTCATCAAGGGTCGTCCCTGCAAGGTTGTTGAAGTTTCGACTTCCAAGACTGGGAAGCATGGTCATGCTAAGTGCCACTTTGTTGCGATTGATATTTTCACTGCCAAGAAGCTCGAAGATATTGTGCCCTCTTCCCACAACTGTGATGTTCCCCATGTGAATCGTACTGATTATCAGTTGCTTGATATTTCTGAGGATGGATTTCTAACCTTGCTTACTGAAAATGGAAATACCAAGGATGACCTGAGGCTTCCTACCGATGAGAGTCTGCTTACTCAGATAAAGGATGGATTTGCTGAGGGTAAGGACCTTGTTGTGTCAGTTATGTCTGCAATGGGTGAGGAGCAGATTTGTGCCCTGAAGGATATTGGGCCAAAGAACTAG 483 0.4762 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLLDISEDGFLTLLTENGNTKDDLRLPTDESLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2077 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Ssu1g2077 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Ssu1g2077 160 CDD S1_eIF5A 86 156 - -
Ssu1g2077 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Ssu1g2077 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Ssu1g2077 160 Gene3D - 86 159 IPR012340 -
Ssu1g2077 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Ssu1g2077 160 MobiDBLite consensus disorder prediction 1 23 - -
Ssu1g2077 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Ssu1g2077 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Ssu1g2077 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Ssu1g2077 160 Gene3D - 1 85 IPR014722 -
Ssu1g2077 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2077 Ssu-Chr1 59204612 59206615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2077 1 159 Eukaryotic Initiation Factors Gene Family AT1G69410 86.792 2.41e-104 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2077 K03263 K02180 gmx:100499632 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2077 1 59204612 59206615 Ssu1g2077 1 59204612 59206615 ECH