Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2076 ATGAGTTTTGctcaaagaagaaaaacacacaGCACAAGAGAAGGATCATTAATGTCAGAGCAGGAAACCGATTCATGGGGCTTCCTGTTTGTCTGTTTCTTGATCCTTTTCTCAGGTAAATTAGTTGCTGGTGATTCATTTAATTCATTGGACACGGACAAACAAGTTCTGCTGAAGCTGAAATCATACTTGCAAAACCAAACTCGTGCAAATAAAGGAGGGTACATAAGCTGGAACAAGAACAGTTCAAATCCTTGTGAGTGGTCAGGAATATCGTGCAGCCTCTTGAACGGGACAACACGGAGGGTTGTGAAAGTAAACATCTCTGCCAGTGACATATATGGTAACATATTCCAGAGCTTCTCTCAACTCACTGAGCTCACACACCTTGACATCTCTTGGAACTCTCTCACTGGGATGATTCCTGAGGACTTGAGCACGAGCCACAACCTTGTGTATCTTAATCTCTCTCATAATACTCTTGAGGGGGAGCTGAATTTGACGGGCTTGACACAGTTGCAAACACTGGACTTGTCTGTTAATAGGTTTTATGGGGAACTTGGGTTGAGTTTCCCTGCCATTTGTGACAGTTTGGTGACTTTGAATGTGTCAGACAATCACTTGAGTGGTGGGACTGATGGCTTCTTTGACCAATGCTTGAGGTTGCAGCACCTGGATTTGAGCACCAACCAGCTGAGTGGGGCCTTATGGACTGGATTTTCCAGGCTGAGAGAGTTTTCAGTTTCAGAGAATTTTCTCACTGGGGCTGTTCCTTCGCAGGCTTTTCCAATTAATTGTAGCCTTGAAAAACTGGACCTTTCAGTAAATGAATTTGAGGGTAAGGCCCCCAAGGAGGTTGCTAACTGCAAGAATTTATTGTTTCTCGACCTCTCTAGTAACAAATTCACTGGAGATATTCCCAGTGAAATTGGTTCCATTTCTGGTCTTGAGTCATTGTTCTTGGAGAACAACACTTTCTCAAGGGATATTCCAGAGACCCTTTTGAACTTGACCAATTTGTTCATTTTGGATTTGAGCAGAAACGGATTTGGTGAGGAGGTGCAGAAGATTTTTGGGAAATTCAAGCAATTGAAGTTTCTTCTACTGCACTCAAATTCCTACACTGGAGGGTTGAACACATCAGgcatttttacattgacaaacCTTAGCCGCTTAGACATAAGCTGCAATAACTTTTCAGGTCCATTACCTGTTGAAATCTCACAAATGTCTGGACTTATCTTCTTAACCTTAACCAACAACCAATTCACTGGTCCTATTCCATCCGAATTGGGAAAGTTGACTCGCCTTGTGGCCCTTGAAGTTGCCTTCAACAGTTTCAGTGGACCAATCCCACCAAGCCTTGGAAACTTGAGTTCTCTCTTGTGGTTAACCCTTTCAGATAATTTATTAACCGGAAAAATCCCACCAGAGTTGGGAAACTGCTCAAGCATGTTATGGTTGAACCTTGCAAACAACAAACTCTCTGGAAAATTTCCTTCTGAACTAACAAGAATTGGAAGGAATGCAAGGGCCACATTTGAATCAAATCATAAAAGTATTGGGCCAGTTATTGCTGGCAATAGTGAATGCTCATCAATGAAGAGATGGATACCTGCTGATTACCCTCCGTTCAGCTTTGTGTATACCATCCTAACAAGGAAGAATTGCAGGGCCCTTTGGGACAGATTGCTCAAAGGATATGATATTTTCCCCGTGTGTACATCTGAACCCTCTTCTAGATCATCACATATATCAGGGTATGTTCAGCTAAGTGGGAACCAGTTGAGTGGTGAAATTCCTTCAGAAATTCGGAACATGGTGAACTTCAGCATGTTGCATTTGGGGGATAACAAGTTCACTGGGAAATTCCTTCCAGAGATGGTAGGTTTGCCACTTGTAGTCTTGAACATGACCAGAAACAATTTTTCTGGTGAAATTCCAAGTGATATTGGCAATATGAAGTGTCTACAGGATCTGGATTTGTCTTGGAATAATTTCTCTGGAACATTTCCCATCAGTTTGGCACACTTAGATGAGCTTAGCAGGTTCAACATCTCATACAATCCCCTCATATCTGGCACAGTCCCACCAGCTGGACACTTACTTACTTTTGACAAGGATTCATATTTGGGTAACCCCCTCTTGGACCTCCCAAAGTTCTTTAACATCTCTGATGATAGAAATAGACCTTTACACAAAGTCTTGAAAAATCCCACAAAATGGTCTTTGGTTTTGGCTCTAGCACTGGCTATAATGGTCGTTGGACTTCTTTTCCTTGTAATATGTTTCTTGGTGAAAAGTCCAAAGGTGGAACCAGGATACCTcatgaagaataaaaagaagCAAGCACATGATTCAGGCAGCTCTGGATCCTCACCATGGTGTTCTGATACTGTTAAGATATTCCACCTGAACAAGACAGTTTTAACACATGCAGACATCTTGGAAGCAACCTCCAACTTCACAGAGGAGAGAGTCATAGGAAGGGGTGGCTATGGAACAGTGTATAGAGGGTCGTTTCCAGATGGGAGAGAAGTGGCAGTGAAGAAGCTCCAAAGGGAAGGAATTGAGGGGGAAAAAGAATTCAGAGCTGAAATGAAGGTGCTGAGTGGTCATGGATTTAACTGGCCTCATCCAAACCTTGTCACACTCTATGGTTGGTGCCTCTATGGTTCACAGAAGATACTTGTTTATGAGTACATAGGAGGTGGAAGCTTGGAGGATCTTGTGACTGATACAAAAAGGTTGACATGGAGGAGGCGCCTAGAAGTGGCAACTGATGTGGCTAGGGGACTTGTGTATTTACACCATGAGTGCTACCCTTCTATTGTGCATAGAGATGTGAAGGCTAGTAATGTGTTGCTAGACAAGGATGGGAAGGCCAAGGTCACAGACTTTGGACTTGCTAGAATTGTTGATGTTGGAGATAGTCATGTGAGCACTATAGTGGCTGGCACAGTGGGGTATGTTGCACCAGAATATGGACAAACATGGCAAGCCACCACAAAAGGGGATGTGTACAGTTTTGGGGTGTTGGTTATGGAGCTAGCAACTGGTAGAAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAATGGACTAGGCGTGTTATGATGGGTTCTGGAAGACAAGGGTTGGGTCAATCTGTGCCAGTTTTGTTGAAGGGATGTgggctagttgagggtgcaaaggAGATGGGTGAGTTGCTCCAAGTTGGAGTGAAATGCACACATGATGCACCACAGGCTAGGCCTAACATGAAGGAAGTTCTAGCTATGCTCATTAAGATATACAATCCCAATGGGGACTCAAATTATGGGCACCTTGTGTAg 3336 0.4245 MSFAQRRKTHSTREGSLMSEQETDSWGFLFVCFLILFSGKLVAGDSFNSLDTDKQVLLKLKSYLQNQTRANKGGYISWNKNSSNPCEWSGISCSLLNGTTRRVVKVNISASDIYGNIFQSFSQLTELTHLDISWNSLTGMIPEDLSTSHNLVYLNLSHNTLEGELNLTGLTQLQTLDLSVNRFYGELGLSFPAICDSLVTLNVSDNHLSGGTDGFFDQCLRLQHLDLSTNQLSGALWTGFSRLREFSVSENFLTGAVPSQAFPINCSLEKLDLSVNEFEGKAPKEVANCKNLLFLDLSSNKFTGDIPSEIGSISGLESLFLENNTFSRDIPETLLNLTNLFILDLSRNGFGEEVQKIFGKFKQLKFLLLHSNSYTGGLNTSGIFTLTNLSRLDISCNNFSGPLPVEISQMSGLIFLTLTNNQFTGPIPSELGKLTRLVALEVAFNSFSGPIPPSLGNLSSLLWLTLSDNLLTGKIPPELGNCSSMLWLNLANNKLSGKFPSELTRIGRNARATFESNHKSIGPVIAGNSECSSMKRWIPADYPPFSFVYTILTRKNCRALWDRLLKGYDIFPVCTSEPSSRSSHISGYVQLSGNQLSGEIPSEIRNMVNFSMLHLGDNKFTGKFLPEMVGLPLVVLNMTRNNFSGEIPSDIGNMKCLQDLDLSWNNFSGTFPISLAHLDELSRFNISYNPLISGTVPPAGHLLTFDKDSYLGNPLLDLPKFFNISDDRNRPLHKVLKNPTKWSLVLALALAIMVVGLLFLVICFLVKSPKVEPGYLMKNKKKQAHDSGSSGSSPWCSDTVKIFHLNKTVLTHADILEATSNFTEERVIGRGGYGTVYRGSFPDGREVAVKKLQREGIEGEKEFRAEMKVLSGHGFNWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEDLVTDTKRLTWRRRLEVATDVARGLVYLHHECYPSIVHRDVKASNVLLDKDGKAKVTDFGLARIVDVGDSHVSTIVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATGRRAVDGGEECLVEWTRRVMMGSGRQGLGQSVPVLLKGCGLVEGAKEMGELLQVGVKCTHDAPQARPNMKEVLAMLIKIYNPNGDSNYGHLV 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2076 1111 CDD STKc_IRAK 828 1098 - -
Ssu1g2076 1111 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 19 1102 - -
Ssu1g2076 1111 ProSiteProfiles Protein kinase domain profile. 822 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2076 1111 SUPERFAMILY L domain-like 241 503 - -
Ssu1g2076 1111 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 19 1102 - -
Ssu1g2076 1111 SUPERFAMILY L domain-like 589 707 - -
Ssu1g2076 1111 SMART LRR_typ_2 313 337 IPR003591 -
Ssu1g2076 1111 SMART LRR_typ_2 124 148 IPR003591 -
Ssu1g2076 1111 SMART LRR_typ_2 458 482 IPR003591 -
Ssu1g2076 1111 SMART LRR_typ_2 386 410 IPR003591 -
Ssu1g2076 1111 Pfam Protein kinase domain 822 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2076 1111 SMART serkin_6 822 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2076 1111 Pfam Leucine rich repeat N-terminal domain 51 94 IPR013210 -
Ssu1g2076 1111 ProSiteProfiles Leucine-rich repeat profile. 150 171 IPR001611 GO:0005515
Ssu1g2076 1111 Gene3D Ribonuclease Inhibitor 49 235 IPR032675 -
Ssu1g2076 1111 ProSitePatterns Protein kinases ATP-binding region signature. 828 851 IPR017441 GO:0005524
Ssu1g2076 1111 Gene3D Phosphorylase Kinase; domain 1 789 901 - -
Ssu1g2076 1111 Gene3D Ribonuclease Inhibitor 584 729 IPR032675 -
Ssu1g2076 1111 Gene3D Transferase(Phosphotransferase) domain 1 903 1107 - -
Ssu1g2076 1111 SUPERFAMILY Protein kinase-like (PK-like) 801 1096 IPR011009 -
Ssu1g2076 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 944 956 IPR008271 GO:0004672|GO:0006468
Ssu1g2076 1111 SUPERFAMILY L domain-like 69 301 - -
Ssu1g2076 1111 Gene3D Ribonuclease Inhibitor 236 378 IPR032675 -
Ssu1g2076 1111 Gene3D Ribonuclease Inhibitor 379 536 IPR032675 -
Ssu1g2076 1111 Pfam Leucine rich repeat 119 161 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2076 Ssu-Chr1 59080015 59083638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2076 28 676 Receptor kinase-like Gene Family AT1G55610 28.550 5.84e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Ssu1g2076 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2076 - - gmx:100781769 1864.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2076 1 59080015 59083638 Ssu1g2076 1 59080015 59083638 ECH