Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2075 ATGGCTGGTAGTAGtaagaaggaggaaaatacaatGCCAGTGGAGCTTGCAATCCAGAGGGAGCTAGAATATAGGAGGATTGTAGCAGCATTTCACTTGCGCCCAAATACTAATTCCACTGAAGAGgtTAAATCATCAAATGATGTTTCCCACCCAAAGCCATTTCCAGGTCCAAGTTCAAGTAAATTTTCAAGCCTTTTAGGAACTAGGCGGAAAGAATCACCAACAAGAAGTGCTCATCATCAGCGTCTACAACAGCAACAACCCATTTCAAGTCTGTCAGGAACTAAGCGGAAGGAATCACCAACTAGAAGTGCTCATCATCCACATCAACAACCATTTCATGGAAGTCTGAATCACCAAGCTAAGACAGATGATTTATGCTGTAAAATCTGCCAAATATCTTGCTTAGGTCCATTCAATCTCAAGCAGCACTTAAGAGGTCACAAGCATAAGCAAAAGTTGCAAATGGGCAGAAGCAATCAGACGCAATGGTGTGAAGTTTGTAGTGTTTTGTGTATGAATGAAGATTTGCTCAAACTGCACTTTCAAGGTCAAAAGCATAAGGCTAAATTGCAGATGTTGGAAATTAGCAAGCAAGGTGGGGAGGCTTCAAATAAGCCAAAATGGTGTGAACTATGCAAATTATGGTGCAGTGATGAGTTTGCTTTCAAGCAGCACCTTGAAGGTAAAAAGCACATCATTCAATTGCATGCTatggagaaagagaaggagagaaGACCATAA 747 0.3896 MAGSSKKEENTMPVELAIQRELEYRRIVAAFHLRPNTNSTEEVKSSNDVSHPKPFPGPSSSKFSSLLGTRRKESPTRSAHHQRLQQQQPISSLSGTKRKESPTRSAHHPHQQPFHGSLNHQAKTDDLCCKICQISCLGPFNLKQHLRGHKHKQKLQMGRSNQTQWCEVCSVLCMNEDLLKLHFQGQKHKAKLQMLEISKQGGEASNKPKWCELCKLWCSDEFAFKQHLEGKKHIIQLHAMEKEKERRP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2075 248 SUPERFAMILY beta-beta-alpha zinc fingers 121 156 IPR036236 -
Ssu1g2075 248 SUPERFAMILY beta-beta-alpha zinc fingers 203 237 IPR036236 -
Ssu1g2075 248 MobiDBLite consensus disorder prediction 80 99 - -
Ssu1g2075 248 SMART c2h2final6 209 233 IPR013087 -
Ssu1g2075 248 SMART c2h2final6 164 188 IPR013087 -
Ssu1g2075 248 SMART c2h2final6 127 149 IPR013087 -
Ssu1g2075 248 MobiDBLite consensus disorder prediction 32 118 - -
Ssu1g2075 248 PANTHER ZINC FINGER RNA-BINDING PROTEIN-LIKE 8 244 - -
Ssu1g2075 248 PANTHER ZINC FINGER RNA-BINDING PROTEIN 8 244 - -
Ssu1g2075 248 Gene3D Classic Zinc Finger 160 195 - -
Ssu1g2075 248 MobiDBLite consensus disorder prediction 52 72 - -
Ssu1g2075 248 Pfam Zinc-finger of C2H2 type 210 233 - -
Ssu1g2075 248 Pfam Zinc-finger of C2H2 type 165 188 - -
Ssu1g2075 248 Pfam Zinc-finger of C2H2 type 128 151 - -
Ssu1g2075 248 Gene3D Classic Zinc Finger 117 159 - -
Ssu1g2075 248 Gene3D Classic Zinc Finger 196 245 - -
Ssu1g2075 248 SUPERFAMILY beta-beta-alpha zinc fingers 161 197 IPR036236 -
Ssu1g2075 248 ProSitePatterns Zinc finger C2H2 type domain signature. 128 151 IPR013087 -
Ssu1g2075 248 SMART ZnF_U1_5 161 195 IPR003604 GO:0003676|GO:0008270
Ssu1g2075 248 SMART ZnF_U1_5 124 158 IPR003604 GO:0003676|GO:0008270
Ssu1g2075 248 SMART ZnF_U1_5 206 240 IPR003604 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2075 132 233 C2H2 Transcription Factor Family AT5G61190 26.016 4.89e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2075 - - ccaj:109791260 341.658