Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2067 ATGTCTAATTATGACGAGATCGCAGAGCTGATATGGTTAAATGGCCAGCTATCTATGCACCCGCTTGGTGGGCTTCAATCCACGTCTCACGAAAAGCCCATACTGAGTAGGGCCCACGATACATTAGAGTCAATTGTTCAACATGCCACGTGCAAACATTACCAACCATCAAAGTTGTTCACTAGGGAAGGCCATGACCCTACTAGTATAAACTCCATTGCTGCATCCTCCGGTGAGATTCAAGCGGTGCCAACATCGACGAGCCAGCGAACATGGTCGAACTCAGATTACTGTGGGAGAAATTTTGGCACCAACACTAACAACGTGTTAGAAGAATGTGACATCCTCAGTGGTTGCGCTAGTGCTGGTGCCACTATTGGTACGGGCAATGATACAACCATGATGACATGGGCTTCTCTTGAATCTGGTCGAAGCTTGAAGACCATGGAGGAAGATTCAGCTTATCACTGTGGATCGGAAATTCGACATAACCAAGATGACCGAGACAGCAAAGCAGAAATATGCCAAAACAATTCAAAAAGACGAAGTCGAACTGCTGCCATCCACAACCAGTCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGTTGAAAGCCTTGCAGAGGTTGGTGCCTAATGCAAGTAAGACTGATAAAGCTTCAATGTTAGATGAGGTGATTAACTACTTAAAGCAGCTTCAAGCACAGATCCAAATCATGAACATGACAAGCATGCCCCAAATGATGGTGCCTTTGGCCATGCAACAACAGCTTCAGATGTCAATGCTAGCCAGAATGGGTGCTGGGCTTGGCATGGGAATGGGCATGGTGAACATGAACAACATGGTAGCCCAAACAGGTGGCCCAAGGTCATTCCCCCAACTCATTCAACAAACAGCTACAGTTGGAGCTCCACCTGCCACTGCCCCAGTATTTGTTGCCCCTTCCTTTATGATGCCTTCCATGATTCAAGCACATGCCCCTGCACCTCCAAAGCCCCAACCTGCATCCTCAGGCTCCATTGCCTCAATTCCTTTGCCTCTTCCATATAGTGCTAGTCTCACCCAACCAATTAATATGGATATACTCAACAACATGGCAGCACTTTATCGGCAACAAATGAGTCAGAACAATCATCAAGCTTTGAGCAGCAGCGTGTCCCAACCACAACATGAACAAGGCCGTGGAGAATAA 1194 0.4665 MSNYDEIAELIWLNGQLSMHPLGGLQSTSHEKPILSRAHDTLESIVQHATCKHYQPSKLFTREGHDPTSINSIAASSGEIQAVPTSTSQRTWSNSDYCGRNFGTNTNNVLEECDILSGCASAGATIGTGNDTTMMTWASLESGRSLKTMEEDSAYHCGSEIRHNQDDRDSKAEICQNNSKRRSRTAAIHNQSERKRRDRINQKLKALQRLVPNASKTDKASMLDEVINYLKQLQAQIQIMNMTSMPQMMVPLAMQQQLQMSMLARMGAGLGMGMGMVNMNNMVAQTGGPRSFPQLIQQTATVGAPPATAPVFVAPSFMMPSMIQAHAPAPPKPQPASSGSIASIPLPLPYSASLTQPINMDILNNMAALYRQQMSQNNHQALSSSVSQPQHEQGRGE 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2067 397 MobiDBLite consensus disorder prediction 177 197 - -
Ssu1g2067 397 Coils Coil 190 210 - -
Ssu1g2067 397 MobiDBLite consensus disorder prediction 376 397 - -
Ssu1g2067 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Ssu1g2067 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 243 IPR036638 GO:0046983
Ssu1g2067 397 Pfam Helix-loop-helix DNA-binding domain 189 234 IPR011598 GO:0046983
Ssu1g2067 397 SMART finulus 190 239 IPR011598 GO:0046983
Ssu1g2067 397 PANTHER TRANSCRIPTION FACTOR PIF7 5 388 - -
Ssu1g2067 397 CDD bHLH_AtPIF_like 184 246 - -
Ssu1g2067 397 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 5 388 IPR031066 -
Ssu1g2067 397 Gene3D - 178 243 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2067 Ssu-Chr1 58848525 58852903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2067 6 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.502 8.42e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g2067 HLH 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2067 - - gmx:102667566 490.345