Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2065 ATGGAACTGACGGAAGAACAGCGAAAACAAGTAGAAGCGAACCGTGCAGCGGCGATCGCGAAACGGAAGGCCTTCTTAGAATCCAGagcccaacaacaacaacaacaaccacaacctCATGCCGAAGGAGAAAACACCAACAACCCCAACCCATGGCACCTTTTCAAGTGCCAAAAGTTCCCTCTCTCTCCCAACCCCCAACCCCCAAAGTTCCTCGCCAGGCTCGAAATATGCTCCCCCGATTCCTTCTCCATAACCCCTCTCCCTCTCCCCTCTTTCCCCTTCCCCGGTCACCAACACTGCCTCTCCACCCTAAACTCCACTCTCTCACACGTGGTGCCGTCGCATTACACGCAGACAAGCGAGGGCGTGAAGGCCTGCGTGTTCAAGCTGGCGGAGTACAGCGCCGTGCTGAGGCGGCTGAAGGCCGCGGCGGAGGCGCTGCGGGTGGAGGAGATTCCGTGGGGGACGTTCAACGTCGTGGAGCGCCTCTCGCATTCGTTCGTGGCGGGGCGGTGGACGCCCGTGCGGCCGGAGCACTTGGCCGACGACGAGGTGGAGCGCCTGGTCGCGAAGCTGCCGAGGACTCTCCTGGACGCGTTGCTCCCTTTCCAGCAAGACGGGCTGAGGTTCGCGTTGAGGAGAGGCGCGCGGTGCCTCATCGCGGATGATATGGGCCTCGGGAAAACACTACAGGCTATTGCTATTGCAGGGTGTTTTGTGGAGGAAGGGTCTATACTCGTAGTTTGTCCTGCTGTGTTGCGGTTTTCATGGGCGGAGGAATTGGAGCGGTGGCTTCCTTTCTGCTTGCCGGCTGATATACATCTCGTTTTTGGCCATCAAGACAACCCTGTATATTTAACAAGAAGCCCCAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTTTGCGGAAGAGCATGCTTGAACGTGAATGGGCTCTCCTGATTGTTGATGAATCTCATCATGTGCGATGTACGAAGAAAACAGAACCAGGAGAGATAAAGGCTGTTCTTGATGTGGCTTCTAAAGTCAAGCGTATAATTCTGCTGTCAGGGACACCTTCTCTGTCAAGACCGTACGACATATATAACCAGATAAATATGTTATGGCCTGGTTTGCTGGGGAAGACTAAATACGAGTTTGCAAAAACTTATTGCGATTTGAAATATATCAAAGGCATCCAAGGAAAATATTTTGGGGATTATTCAAAGGGCATGCGCTTGGAAGAGTTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACACGTGTTGCTACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTGTTGTTAAAGAGATCGGATATAGTTGCTGCAAAAACTGCAGTTGGGGTATTGAATATGGATGCCTCTGAAAGGGAAAGTGAAGACATGCCTTTGGAAAATTTGGATGAACCTGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTGCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATCATTGCAGGATCAGAGAATGCttcaaaaatgataatttttgctCATCACCACAAAGTTCTTGACGGAGTACAGGAGTTTATATGCGAGAAAGAGATAAGTTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGATAGGCAATCAGCAGTAGTCTCATTTCGGTCATCACCAGAGGTTAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTTGTGTTCTTGGAGCTACCACAGTGCCCAACTATAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGGGGACAAACAAATGCAGTTAATGTATACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAACTTTGAACAAAAGTTTACAACGTGTTTCATGTACAACTGATGGCAAATATGATGCAATGAAAGAGATAGAGGTTGAAGGCATTTCTTATTTAGACTCATCTTTGAACAGTGATAATTGTGAAGAGCAATCTGCATTCAAAAATGCATTAGGTGAGACACTATTGGATAAGCAACCTTCTGCAGTAAATTCAAATGAATCAGAAGCAAATCAAGATGATAAATCTGATGAGGGGACTTCTTTTGTTAATAACTCAATTCTGAGTTCTAATATTATGGTTGATAATGTTTGCTGCCAAGATTTAGGCAAGGCTTCAGTTCTGGATGGAACTTGTGATATTGATGTTTTAGATGCTGCGGACAGATGTCCTGAAAAGAATTTTGAAGACAGAGATCGAGTAATAGGGTTGCAGGATATGAAGTCAGGTTCAAAAACAGAAGCAGATAACAACCAGTCTGTTCATCCAGTTCCGGTTGAAGCCGATGGACATTGTTCTAATCAAGTTGATTTTCTGCGATTTGagGTGAGCCCATACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACTGATGAAAGACCACAGCcactttatgaaaattttcgaCCAGAGGAACTTGAGTTGTTAAGTTCTGTTGCTGACGATGAGAAACAGGCTCATGATGAGAAACGGAAAATAGAGTTTGTATCTGTCAGGGACAACCCCGCCTATAGGCATACTCTTCTGGCTTTTGTGGAAGAGTGGAAGAATTTGAGGTCAATTGAATGCAGGAAGTTATTTGGAAAACCGTTACAACTTCCTTTGGCAGTTGAATTATGCTACTTGAGTGAAAGCAATAACCACAACAACAAGGGATTATTAAATGGAGGAAGTAAAAGACGCAAGACACCCTTAATGGAGATTAGCTATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTTTATCTGCGAAGTGGCCTCggtaagaaggaaaaagaatacaCACAAGGCTGGAGTCTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCCTGAGTAACAATGCTAAGAGACCTGAATTTTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATGAGGAATATCGAATGAGAACTAGCAACAGATTCCTCCGTGAGGAACTTTTCAAACTTGAACATGGTGTGTGCACCAATTGCCAATTGGACTGTCATAAACTTGTTGAGCATATAAAACCTTTGTCATTGGAAAGGCGGCGAGACTACATACAGAAAGTAGCACCAAATGTTGCAAAACGGAAGAACATGCTTGAGAAGCTTGTCAATGAACCAACTGAAGGCAATGCCTGGCATGCTGACCATATTGTTCCAGTATATCAAGGAGGagGTGAATGCAAGCTGGAGAATATGAGGACTCTCTGTGTGGCCTGCCATTATGATGTTACTGCCGCACAATGTGCTGAACGACGTAAAGCAAGAGCAAATGCCAGGAAACAACTAAAAGCGTTAATGAATAGCATGAAAAATGGTACTAAGGGTGCTACTGGCACTAACATGAAGGAGAATCAGGACCATAGGCTTCTCGAGGAAGAAGGGAGTATAATTGAGGATGAGCTTTTAGTCGAGGTTCCTGGCAGTGCCTATTCTTTAGCAAACAACTAA 3543 0.4406 MELTEEQRKQVEANRAAAIAKRKAFLESRAQQQQQQPQPHAEGENTNNPNPWHLFKCQKFPLSPNPQPPKFLARLEICSPDSFSITPLPLPSFPFPGHQHCLSTLNSTLSHVVPSHYTQTSEGVKACVFKLAEYSAVLRRLKAAAEALRVEEIPWGTFNVVERLSHSFVAGRWTPVRPEHLADDEVERLVAKLPRTLLDALLPFQQDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFVEEGSILVVCPAVLRFSWAEELERWLPFCLPADIHLVFGHQDNPVYLTRSPRVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTKKTEPGEIKAVLDVASKVKRIILLSGTPSLSRPYDIYNQINMLWPGLLGKTKYEFAKTYCDLKYIKGIQGKYFGDYSKGMRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDIVAAKTAVGVLNMDASERESEDMPLENLDEPDGKLSYQELGIAKLAGFREWLALHPIIAGSENASKMIIFAHHHKVLDGVQEFICEKEISFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTIMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKTLNKSLQRVSCTTDGKYDAMKEIEVEGISYLDSSLNSDNCEEQSAFKNALGETLLDKQPSAVNSNESEANQDDKSDEGTSFVNNSILSSNIMVDNVCCQDLGKASVLDGTCDIDVLDAADRCPEKNFEDRDRVIGLQDMKSGSKTEADNNQSVHPVPVEADGHCSNQVDFLRFEVSPYTGRIHLYTCILGTDERPQPLYENFRPEELELLSSVADDEKQAHDEKRKIEFVSVRDNPAYRHTLLAFVEEWKNLRSIECRKLFGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRKTPLMEISYPLPSDAVWRKVYLRSGLGKKEKEYTQGWSLTDEPLCKLCQKQCLSNNAKRPEFFEDLFCNLVCYEEYRMRTSNRFLREELFKLEHGVCTNCQLDCHKLVEHIKPLSLERRRDYIQKVAPNVAKRKNMLEKLVNEPTEGNAWHADHIVPVYQGGGECKLENMRTLCVACHYDVTAAQCAERRKARANARKQLKALMNSMKNGTKGATGTNMKENQDHRLLEEEGSIIEDELLVEVPGSAYSLANN 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2065 1180 Coils Coil 1 36 - -
Ssu1g2065 1180 MobiDBLite consensus disorder prediction 27 50 - -
Ssu1g2065 1180 CDD HNHc 1069 1109 IPR003615 -
Ssu1g2065 1180 CDD SF2_C_SNF 492 621 - -
Ssu1g2065 1180 Pfam HNH endonuclease 1075 1106 IPR002711 GO:0003676|GO:0004519
Ssu1g2065 1180 Gene3D - 416 711 IPR027417 -
Ssu1g2065 1180 Gene3D - 177 415 IPR038718 -
Ssu1g2065 1180 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1132 - -
Ssu1g2065 1180 Coils Coil 131 151 - -
Ssu1g2065 1180 Pfam SNF2-related domain 218 449 IPR000330 GO:0005524|GO:0140658
Ssu1g2065 1180 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 373 IPR014001 -
Ssu1g2065 1180 MobiDBLite consensus disorder prediction 692 712 - -
Ssu1g2065 1180 Gene3D - 1000 1136 - -
Ssu1g2065 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 663 IPR027417 -
Ssu1g2065 1180 CDD DEXHc_HARP_SMARCAL1 201 424 - -
Ssu1g2065 1180 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 656 IPR001650 -
Ssu1g2065 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 424 IPR027417 -
Ssu1g2065 1180 MobiDBLite consensus disorder prediction 22 50 - -
Ssu1g2065 1180 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1132 - -
Ssu1g2065 1180 Pfam Helicase conserved C-terminal domain 507 610 IPR001650 -
Ssu1g2065 1180 SMART ultradead3 197 392 IPR014001 -
Ssu1g2065 1180 SMART helicmild6 527 610 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2065 Ssu-Chr1 58763319 58782659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2065 505 663 RAD5 or RAD16-like Gene Family AT1G61140 34.161 2.21e-15 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu1g2065 SNF2_N 3.3e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2065 K25861 - gmx:100788690 2058.11