Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2061 ATGAACCCACACCAACAGCACCATGTTCCCATTACCAACCTGCTTCAACATTACTATTCCGCGAACCCGATTTCGTTTTCTTTCCCTCTCACCTCCGATTCCGCTATTCATCCTCCAGGCACCGACCCACTTGCAAATTCGACAACCCCTTATTCTTACGGTGCCCAAACAACAGACTCTCAGACCTGGATCGTCAAACACGCTGACCCCATCAGATATGATCATGCTGTTGGTCCATCACTTGAGACTTCAGCAGCGTCTGCAAGTTTTCCTTCGACATGGAATGGTACATGGTCTCATCAATTTTTCACTAATGAAGCTACAGTAATGTTGCCTGACCAAACCAAAGTCACCAAACCATTGAGATGTGaagtttgcaaaattgattgtAATAGCAAAGATGTTTATGAAAAACACGTCTCTGGAAAGAAACACAAAAGGAATTTGCAGGTGCAGGCTAATCCCACTAATACATTTTTAGCTGGACCCTCACACACAAGTGTACAAACAAATAGTAATATCCAAGGAAAAGTGACAGTTGCTGCTGTAGTCAAGGATATAAAGTCTAAGGAACAAAAGGTTTTGAATGGTGGAGCAACAACAAATTCCGTAAAGGTTTGCGAAACATGCAATGTTGTTTGCACTAGTCAAGATGTATATGACAAACATCTAGCTGGGAAAAAGCATGCTGCTCAGGTTGGCTTGATGTCCAATAATGGGATTGGTCCATACATTGCTGCCTTTAAGCGTCAAGGCGTTGGTCCTTGGAATAAAGCTCCGAAGAAAATCAAGGTTGATCAATCTGCATGGTGTGAAGTTTGTAAGATTAAATGTAACAGCAAGGATATGTATATTACACACTTATCTGGGAAGAAACACCTGAAGAACTTGGAGAAACAGTCAAAGCCAAAAATTGATGCTAGTACTGATACTGCCACTGCGAATACTTCACAACAACCTGCAAATCCAATAATCGGGCCACAAGAAAAGCCAGGTAcagaaaaaccaaaatcaaagaaGGCACCAGAAATGGATATTGAGACGAAGAAATGCAAAATTGTACAAGGTGGGGCTGCAGCAACTGCTGTTAGAATTTGCAATCTGTGCAATGTCGTGTGTAACAGCCAGACAGTGTTTGATACTCACCTTGTTGGACATAAACACACTGCAATGGTGAAGAAACAGGCAGAGTCAGTAGGGGCCTGA 1206 0.4129 MNPHQQHHVPITNLLQHYYSANPISFSFPLTSDSAIHPPGTDPLANSTTPYSYGAQTTDSQTWIVKHADPIRYDHAVGPSLETSAASASFPSTWNGTWSHQFFTNEATVMLPDQTKVTKPLRCEVCKIDCNSKDVYEKHVSGKKHKRNLQVQANPTNTFLAGPSHTSVQTNSNIQGKVTVAAVVKDIKSKEQKVLNGGATTNSVKVCETCNVVCTSQDVYDKHLAGKKHAAQVGLMSNNGIGPYIAAFKRQGVGPWNKAPKKIKVDQSAWCEVCKIKCNSKDMYITHLSGKKHLKNLEKQSKPKIDASTDTATANTSQQPANPIIGPQEKPGTEKPKSKKAPEMDIETKKCKIVQGGAAATAVRICNLCNVVCNSQTVFDTHLVGHKHTAMVKKQAESVGA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2061 401 SMART ZnF_U1_5 266 300 IPR003604 GO:0003676|GO:0008270
Ssu1g2061 401 SMART ZnF_U1_5 202 236 IPR003604 GO:0003676|GO:0008270
Ssu1g2061 401 SMART ZnF_U1_5 118 152 IPR003604 GO:0003676|GO:0008270
Ssu1g2061 401 SMART ZnF_U1_5 361 395 IPR003604 GO:0003676|GO:0008270
Ssu1g2061 401 SUPERFAMILY beta-beta-alpha zinc fingers 362 395 IPR036236 -
Ssu1g2061 401 Gene3D Classic Zinc Finger 183 235 - -
Ssu1g2061 401 Gene3D Classic Zinc Finger 104 152 - -
Ssu1g2061 401 Gene3D Classic Zinc Finger 335 396 - -
Ssu1g2061 401 Gene3D Classic Zinc Finger 257 301 - -
Ssu1g2061 401 SUPERFAMILY beta-beta-alpha zinc fingers 200 233 IPR036236 -
Ssu1g2061 401 PANTHER ZINC FINGER RNA-BINDING PROTEIN 248 397 - -
Ssu1g2061 401 MobiDBLite consensus disorder prediction 300 344 - -
Ssu1g2061 401 MobiDBLite consensus disorder prediction 306 324 - -
Ssu1g2061 401 SMART c2h2final6 121 145 IPR013087 -
Ssu1g2061 401 SMART c2h2final6 364 386 IPR013087 -
Ssu1g2061 401 SMART c2h2final6 205 229 IPR013087 -
Ssu1g2061 401 SMART c2h2final6 269 293 IPR013087 -
Ssu1g2061 401 Pfam Zinc-finger of C2H2 type 366 388 - -
Ssu1g2061 401 Pfam Zinc-finger of C2H2 type 206 229 - -
Ssu1g2061 401 Pfam Zinc-finger of C2H2 type 270 293 - -
Ssu1g2061 401 Pfam Zinc-finger of C2H2 type 122 145 - -
Ssu1g2061 401 PANTHER - 248 397 - -
Ssu1g2061 401 PANTHER - 22 232 - -
Ssu1g2061 401 SUPERFAMILY beta-beta-alpha zinc fingers 265 300 IPR036236 -
Ssu1g2061 401 SUPERFAMILY beta-beta-alpha zinc fingers 98 151 IPR036236 -
Ssu1g2061 401 PANTHER ZINC FINGER RNA-BINDING PROTEIN 22 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2061 Ssu-Chr1 58634502 58637981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2061 176 399 C2H2 Transcription Factor Family AT5G61190 30.252 1.12e-19 89.7