Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2060 ATGGCACAAGAGGCTGATTCCCCTCCAGAAAATGAGGATCAAAGATTCCTAGTGGGTTCACATTCACAACAAGTCAATAGTGACAGTGATAACAGTATCATGGCACAGTTCCTGGGTTGTATAGAGGCGCTTAAGAAGGAGAATGGAAACATTATCGACACGGTTTTGAAGCATGTAGATGAATACCTTAAAGCTAACGTTGTCCATAAGGAGCAGATTGCAGTGCTACAATTGCATCGTGACGACAACTTGGTGGTGGATTCGTTGCCATTGGGAATTATCAACAACCTTCGTGAAAGCATAAGGCTGATGATGACGGCAGGGTTAGAGGAGGAATGTTTACACGTGTACAGTATTTGTCGGAGGGAGTTTCTGAACTCTGAACGCGTCTTTGAAGGGTTCATTCGCGATGAGGATAACTACCCTGCATTACCCGGAATAGGCGCGTTAAGGTTGTGGAAGAACCCTGCATTACCCGAAATAGATGCGGTCAGGTTGTGGAAGAGTTTGAGCATTGACCCTGCATTAGTCAGAATAAATGCGTCCAGGTCTGAATACTTGTTATATCTTACTTATGGTGTTAAGGAGCAAGTCATTGTTCCCGACGGCAGGATTCATCGGATTAGCCATAATGTGTTCGAGtacattcatattttatatcGAAATTGGAAAGGTTTATTCGACGCCATAGTTAATAAAGAGGGAAAGTTTTTACTGTATGGGCACATAGCTGAGATAGCAGACCTGTTAGACAGCAGTTTGGAAGACATCTCCGAAAATTACAATGACCCTACTTTGGGTTATGTTTTCATAATCAACAATCGGAAGTTCATAGAGCTAAGTGCAGAACAGCGTGGATCGAGAACTTCTTTCGCGTTGACGcttatgaatattttgttatttaatttggtaTCAATATTCATTGCTTATGAATTCTCTGCTTCAGCTTTGAATAACTCCCGTGCCAAAATAATTTGTCTGGAGTGTGACTGGTTTGACCGGTTTTTACCAATTCTAGAATGGTCTAGTTTTTTGGAGTTAATAGACCGTTCACCGGACTAG 1062 0.4096 MAQEADSPPENEDQRFLVGSHSQQVNSDSDNSIMAQFLGCIEALKKENGNIIDTVLKHVDEYLKANVVHKEQIAVLQLHRDDNLVVDSLPLGIINNLRESIRLMMTAGLEEECLHVYSICRREFLNSERVFEGFIRDEDNYPALPGIGALRLWKNPALPEIDAVRLWKSLSIDPALVRINASRSEYLLYLTYGVKEQVIVPDGRIHRISHNVFEYIHILYRNWKGLFDAIVNKEGKFLLYGHIAEIADLLDSSLEDISENYNDPTLGYVFIINNRKFIELSAEQRGSRTSFALTLMNILLFNLVSIFIAYEFSASALNNSRAKIICLECDWFDRFLPILEWSSFLELIDRSPD 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2060 353 Pfam Exo70 exocyst complex subunit 197 282 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu1g2060 353 PANTHER EXOCYST COMPLEX PROTEIN EXO70 67 285 IPR004140 GO:0000145|GO:0006887
Ssu1g2060 353 SUPERFAMILY Cullin repeat-like 45 285 IPR016159 -
Ssu1g2060 353 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g2060 353 Gene3D Exocyst complex component Exo70 178 293 - -
Ssu1g2060 353 Gene3D Exocyst complex component Exo70 14 129 - -
Ssu1g2060 353 PANTHER PROTEIN, PUTATIVE-RELATED 67 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2060 Ssu-Chr1 58583148 58586963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2060 197 278 EXO70 exocyst subunit family AT5G58430 33.333 1.50e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2060 - - gmx:100795016 347.051