Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2059 ATGAAAGAAGATCAAGAAATGAAACACGCGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGAAGGTCCTTGGGAGGCCACATGAGGTCACATGTCACCAATGTTTCAACCGAGACAGAGAAACTTTCGTCTTTCAACGGTGGAGGAGACATAGGAACGGGTAGTTCTGAAGGAGGAACTAACAATGGAGGGTATGGTCTGAGAGAGAACCCGAAGAAGACTTGGAGGTTCACGGATTCGAGTGAGGACACTTTGTTGGTGTTGGACAAGCTGTGCAAGGAGTGTGGCAAAGGGTTTCACTCCTGGAAGGCTCTGTTTGGTCACATGAAGTGCCACTCCGAGAGAGTGACCCAAAACAACAGCTTGTTGGAGGATCAAGATTCGTGGACTGATAACACCAATGCTGAGCAGAAGATGCTGTTGGACAGCCACTCCGACAATGAAGCCATTGCTCCAAACCGAAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACATGGCCCCATCAACTTCTTCTGTGTCCTTTGTTTCTGAGGCTGAGCAGGAGCAGGAGCAGGAAGAGGTTGCCATGAGTTTGATCATGCTTAGTAGGGATATGAGTCCTTGGTGTGGTCTCAATCCTGTTAACTCATTGCACTTGGAAGCTCCTTTGATTACAACAAATTTGGATTCTAAGGTTGAAGGCAAGAGGGTTATGTCCAATACCAAAACGGTAACCAAACCAAGGGATATGAAGTGGGAGTCTGGCAATTTGGATGCTTCAAATCTAAACTCCAAAGGGAAAATAAGTTCAGAACTTCTGGGTACTGAGAGTCCTGGAAGTGGATTTGGGGTCAACAAGACCATGGTTTCTAATTCTGCATTTGAGGACAATGGAACagatgataatagtaataagtACACTTCAATCAAGGAAAAGTTTAAGGATTCTGAATTGAGGTCAAGTTCTTTGAAGAGTTGGGTGAACAAGAAGCCTTCAGAAGCTGAATTGAGTAAAAGCTCCAATAAGAGAGGAAAGTTTGAGTGTACCACTTGTAAGAAAATCTTCCACTCATACCAAGCCCTTGGAGGCCACAGAGCTAGTCACAAGAAGATCAAGGGTTGCTTTGCTTCAAAAAATGAGAGCAGTGAAAACAGCACTGAGTTGGAAGCAGACCTCTCCCCTGACCCAACACCAGAAAGTAAGCTCCTGAAGAATGAATATGTGGAAGAACATGAAATGGTTACTGTTACTGATACTACTACTGGTTTTGACAATAAGGCAGACACAGTGAGAGAGTCCAAGAAGGGGAAAGGGCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGCCAAGCCTTGGGTGGCCACAAGAGATCTCATCACTTGGCTGGTGGGTCTGAGAGTGCCAGAAACTGTCAAAGTCAAACAGTTGTACTTGAGGGAGCAGCCCCAGAAATTAGGGACTTTTTTGATCTTAATCTTCCCGCTTCTACAGAGGAAGAAGGTAACAGCCATAGCCATGCTGAGCCTTACAGACCTTGGTGGGTAGTAAGAGGCAGCCACAAGCAGGAGGCACTGGGCCAATTACATGGTGCAGCTTACAAAACAGCACTTGCTGGCAGAGCTAGAGGGTTTGATCACTGGCACAGTATGGGGGAGGCTTTGATTTACTTGGCTGTAGTAGCTGGCAATGTTGCGGTGCTTTGA 1692 0.4592 MKEDQEMKHACKFCSKSFPCGRSLGGHMRSHVTNVSTETEKLSSFNGGGDIGTGSSEGGTNNGGYGLRENPKKTWRFTDSSEDTLLVLDKLCKECGKGFHSWKALFGHMKCHSERVTQNNSLLEDQDSWTDNTNAEQKMLLDSHSDNEAIAPNRRRRSKRRRTRYMAPSTSSVSFVSEAEQEQEQEEVAMSLIMLSRDMSPWCGLNPVNSLHLEAPLITTNLDSKVEGKRVMSNTKTVTKPRDMKWESGNLDASNLNSKGKISSELLGTESPGSGFGVNKTMVSNSAFEDNGTDDNSNKYTSIKEKFKDSELRSSSLKSWVNKKPSEAELSKSSNKRGKFECTTCKKIFHSYQALGGHRASHKKIKGCFASKNESSENSTELEADLSPDPTPESKLLKNEYVEEHEMVTVTDTTTGFDNKADTVRESKKGKGHECPICLKVFPSGQALGGHKRSHHLAGGSESARNCQSQTVVLEGAAPEIRDFFDLNLPASTEEEGNSHSHAEPYRPWWVVRGSHKQEALGQLHGAAYKTALAGRARGFDHWHSMGEALIYLAVVAGNVAVL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2059 563 MobiDBLite consensus disorder prediction 314 328 - -
Ssu1g2059 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 433 455 IPR013087 -
Ssu1g2059 563 MobiDBLite consensus disorder prediction 314 333 - -
Ssu1g2059 563 Gene3D Classic Zinc Finger 1 116 - -
Ssu1g2059 563 MobiDBLite consensus disorder prediction 165 179 - -
Ssu1g2059 563 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Ssu1g2059 563 SMART c2h2final6 9 31 IPR013087 -
Ssu1g2059 563 SMART c2h2final6 433 455 IPR013087 -
Ssu1g2059 563 SMART c2h2final6 90 112 IPR013087 -
Ssu1g2059 563 SMART c2h2final6 340 362 IPR013087 -
Ssu1g2059 563 MobiDBLite consensus disorder prediction 145 179 - -
Ssu1g2059 563 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 522 - -
Ssu1g2059 563 Gene3D Classic Zinc Finger 337 455 - -
Ssu1g2059 563 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 522 - -
Ssu1g2059 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Ssu1g2059 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Ssu1g2059 563 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Ssu1g2059 563 SUPERFAMILY beta-beta-alpha zinc fingers 6 34 IPR036236 -
Ssu1g2059 563 MobiDBLite consensus disorder prediction 39 63 - -
Ssu1g2059 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 340 367 IPR013087 -
Ssu1g2059 563 MobiDBLite consensus disorder prediction 39 71 - -
Ssu1g2059 563 SUPERFAMILY beta-beta-alpha zinc fingers 91 362 IPR036236 -
Ssu1g2059 563 ProSitePatterns Zinc finger C2H2 type domain signature. 342 362 IPR013087 -
Ssu1g2059 563 Pfam C2H2-type zinc finger 340 364 - -
Ssu1g2059 563 Pfam C2H2-type zinc finger 92 113 - -
Ssu1g2059 563 Pfam C2H2-type zinc finger 433 456 - -
Ssu1g2059 563 Pfam C2H2-type zinc finger 9 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2059 Ssu-Chr1 58515893 58518666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2059 1 495 C2H2 Transcription Factor Family AT1G26610 32.000 1.04e-50 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu1g2059 zf-C2H2_6 1.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2059 - - gmx:102662018 802.742