Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2034 ATGGCGATGGCTGCTGCTCTGCGTCGCGAAGGGAGGCGTCTGGCCCAACCCATCAACGCCCTCCAATCCTCTCTCATTTCTCAAGACCAAGCCCCTCATGGCGCGCGCTCCATTTCCACTCAAGTAGTGAGAAACCGAATGAAGAGTGTGAAGAATATCCAGAAAATCACCAAGGCCATGAAGATGGTTGCCGCATCCAAGCTGCGAGCCGTTCAAACAAGGGCCGAAAATTCTCGTGGTCTCTGGCAACCGTTCACCGCTCTTCTCGGTGACAATCCCAGTGCTGATGTTAAGAAGAGTGTTGTTGTTACCATTTCTTCGGACAAAGGTCTTTGTGGTGGAATCAATTCCACGTCTGTCAAGATAAGCAGGGTTTTGCACAAATTGAATTCTGGGCCTGATAAAGAgacaaagtatgttatattggGAGAGAAGGCCAAGGCTCAATTGGTACGTGACTCAAAGAAAAACATTGAGCTCTCCCTAACTGAATTGCAGAAACACCCCCTGAATTATACTCAGGTGTCTGTCTTGGCAGATGACATTCTAAAGAATGTGGAGTATGATGCATTAAGGAttgttttcaacaaatttcattCTATTGTATCATTTTTGCCAACAGTGTCAACAATACTATCTCCCGAGGTTATTGAGAGAGAGGCTGAATCTGGAGGAAAGCTTGGGGAACTGGATTCATATGAGATTGAAGGTGGCGAGACAAAATCAGAAATTCTTCAGAATCTGGCTGAGTTCCAGTTTTCTTGTGTCATGTACAATGCAGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGAATGTCTGCCATGGACAGCTCTAGCAGGAACGCTGGGGAGATGCTTGATCGTCTCACCCTCACTTATAACagAACTCGTCAAGCATCAATCACCACTGAATTGATTGAGATTATCTCTGGAGCTTCAGCACTGTCAGGTTGA 957 0.4472 MAMAAALRREGRRLAQPINALQSSLISQDQAPHGARSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDNPSADVKKSVVVTISSDKGLCGGINSTSVKISRVLHKLNSGPDKETKYVILGEKAKAQLVRDSKKNIELSLTELQKHPLNYTQVSVLADDILKNVEYDALRIVFNKFHSIVSFLPTVSTILSPEVIEREAESGGKLGELDSYEIEGGETKSEILQNLAEFQFSCVMYNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALSG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2034 318 Gene3D - 63 275 - -
Ssu1g2034 318 PANTHER ATP SYNTHASE GAMMA CHAIN 1 317 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu1g2034 318 PIRSF ATP_synthase_gamma 6 316 - -
Ssu1g2034 318 Hamap ATP synthase gamma chain [atpG]. 37 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu1g2034 318 Gene3D ATP synthase, gamma subunit, helix hairpin domain 43 313 - -
Ssu1g2034 318 PRINTS ATP synthase gamma subunit signature 263 282 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu1g2034 318 PRINTS ATP synthase gamma subunit signature 189 206 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu1g2034 318 PRINTS ATP synthase gamma subunit signature 97 116 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu1g2034 318 PRINTS ATP synthase gamma subunit signature 294 315 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu1g2034 318 CDD F1-ATPase_gamma 39 313 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu1g2034 318 PANTHER BNAA05G10580D PROTEIN 1 317 - -
Ssu1g2034 318 ProSitePatterns ATP synthase gamma subunit signature. 302 315 IPR023632 -
Ssu1g2034 318 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 40 316 IPR035968 GO:0015986|GO:0045261|GO:0046933
Ssu1g2034 318 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 39 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Ssu1g2034 318 Pfam ATP synthase 41 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2034 Ssu-Chr1 57810900 57817851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2034 43 316 Primary Pumps ATPases AT1G15700 31.077 1.87e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2034 K02136 - gmx:100790402 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2034 1 57810900 57817851 Ssu1g2034 1 57810900 57817851 ECH