Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu1g2029 | ATGTGTATATTGTGTTTTGAATGTGGTGTGCAGAATCGCTTCAGTGTTTATGGTTTTGTTCAGGTTGCAGGAATGGCTTTCTTTGGTAGAGTTGGGAATGTACTGAGACAAGCAACGAATAGGAAGATCAGTTCAGAGTTATGTTCATTCCCATCTGTTTTCCAGGCTATACGGTGTGTGTCAAATGCTCCAAGTTCAAGGCTGTATATAGGAGGTGTTTCATATAATATTGATGAGCAAAGTTTGAGGgaaatatgttcaaaatatggCCAAGTTGTTGATGCAAGGGTAGTTATGGATCGGGAGACTGGTAGGCCCAGAGGATTTGGTTTTATCACTTACAGTACAGTTGAGGAGGCATCAAGTGCCCTTCAGGCCTTGGATGGACAAGATCTGCATGGTCGCCGGTTAAAGGTAAATTTTGCCAATGAAAGACCCCATGgatttggtggtggtggtggtggttttgATGGATCTTATGGCAGTACTCCCTATGGTGCTGGAGCTGGCACTGGATATCCAGGTAGTTATGGCAACTCTCCATATGGTGCTGCTGCAAGTAGTGGTGGGTATGGTAATGCTGGTAGTGGCAATGCTGCTGGAGGTTATGGCAGTAGTGGATATGGTGGAGGTGGCTACGGATTGGGTGGCAGTTTTGGGGGCAGTGGCGTTGGCAATAACTATGGTGATGCTGGTCCACACGGTGGCAATGCTACTGGAGGTTATGGCATCGGGGGATATGGTGGAGGGTCTGGTAGTGATGTTGGTGCCTATGGTAGCAATGCTGCTGAAGGTTATGGCAGCAGTGGATATGGTAGAGGATCAGGTGGCAGTTTTGGGGACAACAGCTCTAGCAAGAACTATGGTGATGCTAGTACCTATGGTGGCAATGCTGCTGGAGGTTATGGCAGTGGTAGATTTGGTGGAGGATCAGGTGGTGATGCTGGTGCCTTTGGTAGCAATGCTGCTGGAGGTTATGGCAGCAGTGGATATGGTGGAGGATCGGGTGGCAGTTTTGGGGACTGCAGCTCTGCTGGCAAGAACTATGGTGATGCTGGTGCCTATGATGGCAATGCTGCTGGAGTTTATGGCAACGGTGGATATGGTGGAGGATCAGGTGGCAGTTTCAGTAGCAGCAGCTCTGGCAATAACTATGGTGCTTCTGGGGGTTACAGTGGAAAAGCAACAAATTATAGGAATGCTGGTAACTTTCCAAGCGGTAACACTTACACCGATGGAACAGGTGGAGGTTATGGTGGTAACAGTGGGAATTATGGTGTTGCTGTGGGTGGTGAAGGTAATACTGGTAACTATGGTAGTGCTCCTGCTAGTGGTTATGGTAGCTATGGAGCTGCTGCTGGATTTGGcaagaataataattatgacAGTTCTGTGGGATTGGGTGGCAGCAGTAGCTATGGTAGTGTTGCTGCTGGTGGCGGCCAGAGTTTTGCCGATAGTCAACAACCTGGAAGTGCCACAGCGTATGGCAGTGGTGGTACGGGTACTGGCAGTGGCTTTGCTGGTGGATATTATGGCAGCAATGGCCAATTTGATAGCAATCAAAGCAGCAATGTGGGTCAACATGGTGGAGATTTTGGAGGGTCGCTTGAAGAAAATTTCAAGAATAACGATTTTGAAAATGACGCCTTTGCTAGACGAGCTTGA | 1668 | 0.4658 | MCILCFECGVQNRFSVYGFVQVAGMAFFGRVGNVLRQATNRKISSELCSFPSVFQAIRCVSNAPSSRLYIGGVSYNIDEQSLREICSKYGQVVDARVVMDRETGRPRGFGFITYSTVEEASSALQALDGQDLHGRRLKVNFANERPHGFGGGGGGFDGSYGSTPYGAGAGTGYPGSYGNSPYGAAASSGGYGNAGSGNAAGGYGSSGYGGGGYGLGGSFGGSGVGNNYGDAGPHGGNATGGYGIGGYGGGSGSDVGAYGSNAAEGYGSSGYGRGSGGSFGDNSSSKNYGDASTYGGNAAGGYGSGRFGGGSGGDAGAFGSNAAGGYGSSGYGGGSGGSFGDCSSAGKNYGDAGAYDGNAAGVYGNGGYGGGSGGSFSSSSSGNNYGASGGYSGKATNYRNAGNFPSGNTYTDGTGGGYGGNSGNYGVAVGGEGNTGNYGSAPASGYGSYGAAAGFGKNNNYDSSVGLGGSSSYGSVAAGGGQSFADSQQPGSATAYGSGGTGTGSGFAGGYYGSNGQFDSNQSSNVGQHGGDFGGSLEENFKNNDFENDAFARRA | 555 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu1g2029 | 555 | MobiDBLite | consensus disorder prediction | 518 | 555 | - | - | |
Ssu1g2029 | 555 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 66 | 144 | IPR000504 | GO:0003723 | |
Ssu1g2029 | 555 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL | 25 | 301 | - | - | |
Ssu1g2029 | 555 | SUPERFAMILY | RNA-binding domain, RBD | 62 | 170 | IPR035979 | GO:0003676 | |
Ssu1g2029 | 555 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 25 | 301 | - | - | |
Ssu1g2029 | 555 | Gene3D | - | 39 | 160 | IPR012677 | - | |
Ssu1g2029 | 555 | PRINTS | Eggshell protein signature | 239 | 254 | - | - | |
Ssu1g2029 | 555 | PRINTS | Eggshell protein signature | 150 | 161 | - | - | |
Ssu1g2029 | 555 | PRINTS | Eggshell protein signature | 266 | 276 | - | - | |
Ssu1g2029 | 555 | PRINTS | Eggshell protein signature | 308 | 326 | - | - | |
Ssu1g2029 | 555 | SMART | rrm1_1 | 67 | 140 | IPR000504 | GO:0003723 | |
Ssu1g2029 | 555 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 68 | 138 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu1g2029 | Ssu-Chr1 | 57670581 | 57673653 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu1g2029 | 62 | 184 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 33.333 | 7.59e-09 | 56.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu1g2029 | K12741 | - | gmx:100801928 | 280.411 |