Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2028 ATGTCCAGGCTTGAGGAAGAGTTAGTCCACATTCTTGTTCAGCACAAGCAATACTTTGAGCCTGAATACATGTCTTTCCATTCAAATAGAGTGGATATGGTGTATGATGAATCCTTTCGTTCAGTTGAGGATGAACAAATTGACGAGGCCTCCCGGAGTTGCGGTGCTAGCCAATCCGAGGCCAGCACTGTTGATCTGGTGAATCCAGCAGTGCTTCAATATCTCAAGAGCATTGCAAATGTCATGTTTGGTTCAAAATACCATCAGGAATTCAGTCAGGTCTTCGTTACATCCAGGAGGGATGCCTTGGCTGAGTATTTTGTCATTCTTGAGATGGAAAAGTTGAGCATTGAGGATGTGCTAAAACTGGAGTGGCATTGCTTGAACCGTGAGATAAAGAAATGGATTCGAGCCATGAAGATCATTGTCAGGGTATATCTTGTCAGCGAGAAACGGTTATGTAAGCACATCCTTGGAGACTTTGGATCCTTTTATCAATTTTGCTTTTCTGAAATATCTCAGAGTTTTATGCTGCACCTTTTGAACTTTGGTGAGGCAGTGGCAATGGGAACACACACACCAGAAAAATTGTTTCGTTTACTTGACATGTATGGGGTTTTGGAGCATCTTGCTGTGGATGTAgatattttgttctttgaagAAGTTGGTTCTTTTGTTAGGGGAGAGTTTCACAAGCTTCTAAGGAGGTTTGGTGACACTGTTAAGTCGACATTTCTGGCATTCAGAAATGCTATTGCAACCAACCATTCAAAGACCCCTCTTCCTCAAGGGGGTGTTCACCATCTTACCAAGTATGTCATGAATTACATCATGACACTAGTTGAATATGGTGACACCCTTAATCTCCTTCTTGTTGATGAAAGTTCAATTGATCCTGCGGGCAATAAATATGACACCTCAGCTCTCTCATTGTGTCCAGTGGCTTGCCACTTTCTGTCAATCACCACAACTCTAGAATCCAACTTGAGCAACAAATCCAAGTTATACAAAGATGTGGCTTTGCAACATATTTTCATGATGAATAACATTTATTACATGGTGCAGAAGATCAAGTGCTCTGACCTAAGCCATCTCTTTGGAGACTGCTGGCTTCGCCAGCACACCGCAAAGTATCGGCACGACGCAAGGTGTTATGAGAGGGTCACTTGGAGTTCAGTACTTTCTACGCTTAAGGATGATAGTGAGCCAAATTGTGTTTCACAGAGAACTTTGGAGAAAAGGTGCAAAGAGTTCAGCACTGCCTTTGGTGAAGTGTACAGGATCCAGACAGGGTGGTGCATCCCAGACCCTCAACTTCGTGAGGATCTACAAATTTCAGTGTCTCAGAAAGTGGTTCCTGCATACCGCACATACATTgggagaaactcatctaacattGCTGAGAAGTATATCAAGTACACTGAAGATGATCTACAAAGTTATATTTTGGATCTTTTTCAAGGGTCACCAAAATCTTTGCACTATCAGCACAGAAAGTGA 1500 0.4147 MSRLEEELVHILVQHKQYFEPEYMSFHSNRVDMVYDESFRSVEDEQIDEASRSCGASQSEASTVDLVNPAVLQYLKSIANVMFGSKYHQEFSQVFVTSRRDALAEYFVILEMEKLSIEDVLKLEWHCLNREIKKWIRAMKIIVRVYLVSEKRLCKHILGDFGSFYQFCFSEISQSFMLHLLNFGEAVAMGTHTPEKLFRLLDMYGVLEHLAVDVDILFFEEVGSFVRGEFHKLLRRFGDTVKSTFLAFRNAIATNHSKTPLPQGGVHHLTKYVMNYIMTLVEYGDTLNLLLVDESSIDPAGNKYDTSALSLCPVACHFLSITTTLESNLSNKSKLYKDVALQHIFMMNNIYYMVQKIKCSDLSHLFGDCWLRQHTAKYRHDARCYERVTWSSVLSTLKDDSEPNCVSQRTLEKRCKEFSTAFGEVYRIQTGWCIPDPQLREDLQISVSQKVVPAYRTYIGRNSSNIAEKYIKYTEDDLQSYILDLFQGSPKSLHYQHRK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2028 499 Gene3D Exocyst complex component Exo70 1 495 - -
Ssu1g2028 499 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 493 IPR004140 GO:0000145|GO:0006887
Ssu1g2028 499 PANTHER EXOCYST COMPLEX COMPONENT EXO70E2 1 493 - -
Ssu1g2028 499 Pfam Exo70 exocyst complex subunit 133 483 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu1g2028 499 SUPERFAMILY Cullin repeat-like 1 486 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2028 Ssu-Chr1 57586434 57587933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2028 1 487 EXO70 exocyst subunit family AT5G61010 49.593 2.32e-161 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2028 K07195 - gmx:100791622 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2028 1 57586434 57587933 Ssu1g2028 1 57586434 57587933 ECH