Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2023 ATGATGATGGCAAGTTCAAGAGAAGGTCATCAAGCCAAGCAAGAGGGTGACACCATTAATATTGACAAGTTCTCCAAGGCATCGTCTACTTCAAGACAATGGTCAGCATTCAGAAATCCAAGAATTGTGAGAATGTCACGTTCTTTTGGGGGAAAAGATAGGCATAGCAAGGTTTGCACCATAAGAGGGTTGAGGGACAGAAGGATTAGGCTCTCAGTGCCCACAGCAATTCAGCTATATGATCTTCAAGACAAGCTTGGGCTCAGCCAACCTAGCAAAGTTATAGATTGGTTGCTTGAAGCCACTAAATTTGACATTGACAAGCTCCCTCCACTTCAATTCCCTCAGGGTTTTGCTCAATTTCATCATCAACAAACCCTACTCCCCTTTCATGGATCAAGTGCCTCCCAGCTTTCTCTTGGACCCTTCTGTGATGCTAGCTCCACATTAGTAAGGGATGGGGGGATTCAAAACCTTATGGCAAAGTCAAGGTATTGGGAAAATATAGATTCAATATCAAGATTTAAAGGTAAGGAAGCTGAAAAGGGCAAGTGGATCAAAACAAATGAGCAAGAAAATCAAGATGGTGTTGTTGGAGGTTACAACAGCTTGCAAGTTTCTACTCAGAGGCTTTTCCCAATGGGTAGTACAACTACTACTACTCACTCCCTTTTACCTGGTTCGTTAAACAATACCACGTCATACAACTCCTACAATTCTGAGCCGTCTAGTTTGTCTTTATCCCAATTTGGAAGCCATGGGATGTTTCCTTCCCAGCAGGTAGATCCCAATCCAAGCAGTGGCAATGGTGTGCAATTCCCATCTTCTTTGCCATTACCATCATCTGGTTCTCAATTATTGTTAGGTTCATCTTCTGCTACACCATCATTTTTTACTACCTATGCTCCATTTATGACACCCTCAGTGGACAATGATCCTAGACAGTTCAACCATATTCAGTTCTTGAACTCAGGTTCTCAACTCTTGCCTCATCCTCTCAATATTCCATCTCTTCACTCATTCAATTCACATGTCAGACCCTTCCCAGCAGCACCCTTTAGTCCAAAGCTTTTGGCTTCggatagcaacaacaacaaccgtAGCCAACAAGATAAGGGTAGCACTTCTTGA 1131 0.42 MMMASSREGHQAKQEGDTINIDKFSKASSTSRQWSAFRNPRIVRMSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLQFPQGFAQFHHQQTLLPFHGSSASQLSLGPFCDASSTLVRDGGIQNLMAKSRYWENIDSISRFKGKEAEKGKWIKTNEQENQDGVVGGYNSLQVSTQRLFPMGSTTTTTHSLLPGSLNNTTSYNSYNSEPSSLSLSQFGSHGMFPSQQVDPNPSSGNGVQFPSSLPLPSSGSQLLLGSSSATPSFFTTYAPFMTPSVDNDPRQFNHIQFLNSGSQLLPHPLNIPSLHSFNSHVRPFPAAPFSPKLLASDSNNNNRSQQDKGSTS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2023 376 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 372 IPR005333 GO:0003700
Ssu1g2023 376 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Ssu1g2023 376 Pfam TCP family transcription factor 51 158 IPR017887 -
Ssu1g2023 376 PANTHER TRANSCRIPTION FACTOR TCP17 1 372 - -
Ssu1g2023 376 MobiDBLite consensus disorder prediction 354 376 - -
Ssu1g2023 376 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g2023 376 MobiDBLite consensus disorder prediction 357 376 - -
Ssu1g2023 376 MobiDBLite consensus disorder prediction 249 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2023 Ssu-Chr1 57413131 57414261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2023 11 308 TCP Transcription Factor Family AT5G60970 43.631 3.62e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu1g2023 TCP 5.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2023 - - gmx:100788984 602.053