Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2022 aTGGCAGCAAAGCTCCTGCATTCTTTAGCAGATGACAACCCAGATCTGCAGAAGCAGATAGGATGCATGACTGGGATTTTCCAGCTCTTTGATCGTCACCATATTCTCACGGCTCGCCGCATTAGCCAGAAGAGGCTTCCTTCTGGTAATTCGCACTTCAGTGATGGCAGCTTGGAAAGAGATTCTGATAACACACGCCATCGACAAACAGCAACTGATACTAGCTTAAACAAGGGTGTGAATGAAAGGCAAAGAATTTCAACTGAATCATCAAGAGCATCATTCTCTTCTTGTTCATCGTCGGTGTCCTCTCCAGACTGCAAGGCTGAAGCAGAGGCTCCATTTGACCGGATTCTTTTCCCTGAAACTCCTTCAAGGGATGCAATTATGAACCAACCAACCATCTCTCCCCATTTTGGATATCATTCCCTTGATCTGAGGGATGTGGTGAAGGATTCTATGTATAGGGAAGCCCGAGGACTGTCAGTGAAGACTACAGCCAAAGAGAAATCTGCCACTAATGCCATGAAGCACAGGGATTCACCACGACCTATTCAGTTGTCCAAATCTGTTGATGAATCTTACAGAGTTGGAATAGACGGAAAACAAAGTGTGCCTATTGATCTAAAGGAGTCCATCCGAGTCCTTGCTAAACTTAGAGAAGCACCTTGGTATTATGCAGAAACCAAAGAACTTCCAAGATCATCACATGAAGTAAAAGATGGACACTGGCATTCCATCTCAAAGGATGCTCCTTGGTTTGCTtatgaaggaaaagaaataagccGTTTATCTTTTGAATCACGAGATACCATCAAATCCACACCAAAGCTAAAAGAGCTTCCTAGACTTTCACTGGATAGTAAGGAAGGTTCATTGCACACTTACAGCACTGACTCAAAAGCCACTCACCACACGAGAAACATTTACAGTGGCACCTCTACCTCAAATGACAAATTATCTACCCTACAACAGTCTTCAGCAACCCCAAGTCGTCCACCTAGTGTTGTGGCAAAATTAATGGGCTTGGAAGCGTTACCAGATTCCTCTTTGGCTGGTGATACTCAATCAAGTTCAACTGAAACTTACTCAGCACAAGACAGTGGTCAGTTTCCAAGATCATCAAAAAATGGACTCACCAGGCCACTCCGAATTTCTAATTCTCCAAAAATCTCATTGAAAGACCCAACTTCCCCACGGCAAAAGAATCCTAATCTGGTTATGAAACCCATCTCGAGTTCAAGGTTTCCCATTGAACCAGCACCATGGAAGCAGCAGGATGGAAATCAAAGCTCCCAGAAACTGAATTCAAGGGCCATAAAAGCTCCAGCGAGATCACCAGATTCCTTTCCTTCAGTTTATAGTGAGATAGAGAAGAGATTGAAGGACCTTGAATTCAAACAATCTGGAAGGGATCTCAGAGCACTAAAACAGATACTTGAGGCAATGCAAGAAAAGGGGCTATTAGAGAGCAGAAAAGAAGAACAAGCTCCAAATGCTGTTGGAAGTCAAAGTGACTATGAACCAAAAGCTACCAATCAAATTCAGAATACCAGGTCAGTAAGGCAACAAAACACACAGAGAAACAATTTTCTATCTTCCACACTCAAGGGATCTGACTCAGCAAGGGGTTTTGAATCCCCAATAGTGATAATGAAACCAGCAAAACTTGTTGAGGAAACTGTGATTTCTGCTTCTTCAGTCATTCCAGTTGGTGGCCTTTCTGGTTCCCAGAAACACCAGAATGGTGGTGTATATGTAGATAATAAAACCGGTACATCTTCTACTCGAGTAGCAAAAGATCAGTCTCCCAGAAACGTTCACCGGGATGCTTCTGCCAGTTTCATTGATAAGAAAGCAAGTAGTAGTAAGACTACAAGATCAGTACAATCTCAATCTAGGCCTCAACAACTTCCAAAAGAAAATAGCCAAAGTTCAGTGAAGCACTCAGGATCTGTGAGCCCAAGATTGCAACAAAAGAAGTCGGGGTTAGAGAAGCGGTCTTGTCCGCCTGCCCCACCCTCGGATTCAAACAAACCCAGAAGGCAATCTGGTAAGAAGGCAACAGAATCAGGTTCCCCAGGTGGAAAACTAAGACCCAAAACCCTCAACTTGCAGCATAGTGATGAGCAACTGAGTGAGATAAGCACTGAATCAAGAAGTTTAAGTTGCCAGGGGGATGAAATCTCTCTGCAATCAGACAGTTTAACTGTCAACTCAAAGATGGATATGGAAGTCACAAGTAGTTTACAATCTGTTGAAATTGATGACATCCAAAGCCCATCTCTGAAGGCTGTGAAGCAGTTGATTTCAGAGACAGAACAGAAAAAATCAACTACAAGGTTGGATGGGGATGAGACAGTTGCAGAACTTGCAACAGATGCCCCGGAGCATCCAAGCCCTATCTCAGTTCTTGATGGTTCAGTGTACAGAGATGATATGCCATCCCCAGTCAACCAGATATCTGAAGATTCAAAAGGTGATGATGCTCAAGAATCCaaagaaaatgagattaaaGATCAGTGGGACCCTGCAGATAGCCTTTCATTTAACAGCATGGGATCCGGAGAGATCAATCGCAAGAAACTGCAGAACATAGATCACCTTGTTCAGAAGCTTAGACGGTTGAACTCCAGTCATGATGAAGCCAGAATCGATTACATTGCTTCCCTGTGTGAAAACACAAATCCAGACCACAGATACATCTCTGAAATACTATTAGCTTCAGGTCTCCTACTCAGAGATCTGAGTTCCGAGTTGCTGACATTTCAACTTCACTCGTCGGGTCATCCCATTAACCCTGAGCTATTCCTTGTCTTGGAACAGACCAAGGCAAGTAGTTTGCTTTCAAAAGAAGAAAGCAGCCCCAGAAAAGCTGCTAACGCAAAGCTGAACAAAGAGAAATTTCACAGGAAGCTCATCTTTGATTCTGTGAATGAGATTCTTGGTGCAAAATTAGGCTCCTCCCCAGAGCCATGGTTTCAGCCTAACAGTAACAGACTCACAAAGAAAACATTGAGTGCTCAAAAGCTTCTTAAAGAACTATGCTTTGAGATCGAAAAAATTCAAGCCAAGAAGCCAGAATGCTGCttagaagatgaagatgatagTCTGAAGAGTATGCTGAGGGAAGATGTTATGCATGGCTCAGAAAGTTGGACAGATTTTCATGGCTATTTACCTGGGGTTGTGTTGGATGTTGAGAGACTGATATTTAAGGACTTAGTAGATGAGATTGTGATTGGTGAATCAGCTGGTTTGCGAGTCAAGCCATCAGTTAGGCGCAGGAAACTATTTGGAAAGTAG 3306 0.4262 MAAKLLHSLADDNPDLQKQIGCMTGIFQLFDRHHILTARRISQKRLPSGNSHFSDGSLERDSDNTRHRQTATDTSLNKGVNERQRISTESSRASFSSCSSSVSSPDCKAEAEAPFDRILFPETPSRDAIMNQPTISPHFGYHSLDLRDVVKDSMYREARGLSVKTTAKEKSATNAMKHRDSPRPIQLSKSVDESYRVGIDGKQSVPIDLKESIRVLAKLREAPWYYAETKELPRSSHEVKDGHWHSISKDAPWFAYEGKEISRLSFESRDTIKSTPKLKELPRLSLDSKEGSLHTYSTDSKATHHTRNIYSGTSTSNDKLSTLQQSSATPSRPPSVVAKLMGLEALPDSSLAGDTQSSSTETYSAQDSGQFPRSSKNGLTRPLRISNSPKISLKDPTSPRQKNPNLVMKPISSSRFPIEPAPWKQQDGNQSSQKLNSRAIKAPARSPDSFPSVYSEIEKRLKDLEFKQSGRDLRALKQILEAMQEKGLLESRKEEQAPNAVGSQSDYEPKATNQIQNTRSVRQQNTQRNNFLSSTLKGSDSARGFESPIVIMKPAKLVEETVISASSVIPVGGLSGSQKHQNGGVYVDNKTGTSSTRVAKDQSPRNVHRDASASFIDKKASSSKTTRSVQSQSRPQQLPKENSQSSVKHSGSVSPRLQQKKSGLEKRSCPPAPPSDSNKPRRQSGKKATESGSPGGKLRPKTLNLQHSDEQLSEISTESRSLSCQGDEISLQSDSLTVNSKMDMEVTSSLQSVEIDDIQSPSLKAVKQLISETEQKKSTTRLDGDETVAELATDAPEHPSPISVLDGSVYRDDMPSPVNQISEDSKGDDAQESKENEIKDQWDPADSLSFNSMGSGEINRKKLQNIDHLVQKLRRLNSSHDEARIDYIASLCENTNPDHRYISEILLASGLLLRDLSSELLTFQLHSSGHPINPELFLVLEQTKASSLLSKEESSPRKAANAKLNKEKFHRKLIFDSVNEILGAKLGSSPEPWFQPNSNRLTKKTLSAQKLLKELCFEIEKIQAKKPECCLEDEDDSLKSMLREDVMHGSESWTDFHGYLPGVVLDVERLIFKDLVDEIVIGESAGLRVKPSVRRRKLFGK 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 41 107 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 424 439 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 572 601 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 572 736 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 290 333 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 350 410 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 283 334 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 497 540 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 69 106 - -
Ssu1g2022 1101 Pfam DUF761-associated sequence motif 328 350 IPR032795 -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 825 842 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 616 659 - -
Ssu1g2022 1101 PANTHER LONGIFOLIA PROTEIN 1 1099 IPR033334 GO:0051513
Ssu1g2022 1101 Pfam Domain of unknown function (DUF4378) 898 1078 IPR025486 -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 705 736 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 348 451 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 792 846 - -
Ssu1g2022 1101 PANTHER LONGIFOLIA PROTEIN 1 1099 - -
Ssu1g2022 1101 MobiDBLite consensus disorder prediction 487 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2022 Ssu-Chr1 57392886 57398011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2022 139 1100 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 47.667 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2022 - - gmx:100787391 1912.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2022 1 57392886 57398011 Ssu1g2022 1 57392886 57398011 ECH