Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2020 ATGTATAATCAAGTGAATCGCGGTTCTCATTTTGGGCAGAGTTCTGTCCCTCCGGTgctgccaccgccaccaccaccactgccataTCAGCAGGCTCCGCCGCATTTCCATCAATTCCCACCACCTAACATTGGTggtccaccaccaccaccatcatctaACATTGGAGGTCCACCACCTCCaccgcctccaccaccaccatctaACATTGGTggtccaccaccaccaccaccaccagcaCCTCCTCATGTGTATTTACATGGCCCACCTCCTCCTACTTCGTCCTCAGTTCCCTTGAACCTACCAGTTCAAGGTTCACTTAATTTGATACCAAATGCAGGACCATCCTATGGTATCCCTTCTCAATTGCACCATGGGAACACCATGGCGCCGCTGACCGCTTGGGCTCCAGGGCCCCCAACTAGAGTATTGCCACCGCTACCACGACCACCTCCCTCATCTTCCCAAGGACAAATTTTGTATAACCCTCCTTTCCACCCACCTCCTCCGCAGCCTGGTGATGTTCAGAATCTGCATAATGCTCCTCCACCACCACCCCCTTCAGTGTATTTCCATTCAACTGTTGGGAATTACCAACTGCCTTCCGTTGCTCCCCCACCGTTGCCATCGTCTCCACCACCTGTTCTGCCGGCTCCGCCGCCTCTTACCCCTCCCATAACCTCTGCATCATCAAATGCTGCATGCGCCAATGAGCCTAACTCTGTGAAGGTTTCTGGCTTAGAATCAAAGGCTGTGGATTCGGTTGGTGGAGTTGTAGCGTCTCATCCATCTGGTGTTGTGCCTGTACATGATTCTGATTCTAATTGGGATGGTGTAAGTTGTAGAGAGGTTGCTGGTGCTGACAGAGATGAGGATCTGCCCCCACCCAAGCCAACagaagaaaaaacaatgaagaataTTGAAGCTTTGTGTCATCTTATTTCTGAGAAGGGTGCTGATATTGAGGATAAGATTCGTCAAGATGAATTTCAGAATCCTGAATATGCATTTTTGTTTGGCGGTGACCCAGGAACTGAAGCTGCAATTTCTCACACTTATTTCCTGTGgatgaagaagaaatataatttgGATACTGGATGGcatgaaaagaaaaggcaatCAGAGATAGTGTACTCTTCAGGGAAACAGTATCATCCGCATGTTGCAACTGTAAGTGCTGATTCTGACATGGAAATGGAAGATGATATCACACTTTCTGACAAGGACCAAGGTTCAAATTATGCAACTGAAGTCCTAACTCAGCAGCATAATCGGGATGATGATGTGTTTAGCATGAATCAGAATATACAGCAGCTGCAGAATTTAACAGAAAATGATCCTGCCAAGGACATTTCATCCTGCAGTACATCATACTTTGGATCCAAAGGAGTCAGCAAACAAAATGAAGGACCAGAGATTTTATCTGATTCGGAGCACATGAAATCTGCAAGATCAGTTACCAAGGTTTGTAGTCCTGTTAATGATTCCACTGAAGTGGCTGAATTACCCCTTGGCACAGCTTTGGAGAGATCTGCAGCTCCTCAAGATGACGATTTCACTCGTACTGGTACTTCTGATCACAATGAAACCACTAATCCTGATAAAGATTATGGGCTACTTATAAGGAGTGGCAGCCCAATAAGACTTATTCAAGATTATGCTTCTGATGACACTTCAGATAATGAAGATGAAGACAATGCTGCAGATGCTAATGTTTTCACGATCTCAGGAGGGGTTGACACTCGTATTTCAGCTGCCCACAAAGATTCTGGGAGTTATATGGAGACTGATATTGGATCTAAGAGTTCCTCCAGTACCCCCAAGGGGTTTGGGCTGCTATCCAGAACATCACAGGAGGATTCAGAAATATCTCCACATTTAGTACAAGAGTCTAAGGAAACCTGTAAAAAATCTGTCTCACGTTGGACTAGTAATGAATGTATTGAGCATAACCTTGAAAATCAGGTGTCTGTTAATTTTACTGCTTCGGTAGAAGCTTTCAAGGGCAAAGATGGACTAGAGGGTACTGGCATTGATAGTGGGAGTAAAATTGGTAATGCTGTAAAGGAAGATGAGGGGAAAGCTTCAAAGTTTGAACCAAATGTTCTGAAAGTAGATGAATTTGGAAGACATCTCAGAGAAGGTCTTACAGATAGTGACTCTGATGATTCACGCTATCATCGGACAAGGAGACTAAACAAAAGAGATAGAAGCTGGAGTCGCAGCCGGTCTCCTCCAGACAGGAGGAGTAGGAGGAATAGGAGGAGTCCCAGGAGGAGAAAGGATAAAAGGAACAGGTCTCGCAGCTGGTCCCCTCGGCACCGAAGAAGCAGGAGTAGGTCTCCAATCTTAAGACGTTCAGGTGACTTTCGTGGTGAGAATGTGAAAAGGAACAAGGATCAGTGCTTGGACTTCCTTCGAGGAAAGTGCTATCGAGGAGCATCTTGCAAGTACATTCACCATGAATCTGACATGAATGCTACTTCAAGGCGCTATAGGAATAAACATGATCTGGAAGTCAGTTCTCATCCAAAAGAATCCAAGTTTAATGGAGACATGAAGACTATTTCTTCTCAAGTGTTGGATAATGAGCGTGATGGAGTCAGAAATCAGGATGTGGATCTTTGCCAGAATGTAACTAGCCAGGAAGTAGTACAGAAAAAGAAGATTCGGGGAGGCATGATGTTGTGTCAACTACCATTCACCTCGATGGTCAATCTGCTAATAGCAATCCAAGAAACCAAAGTAGTCAGGGAGGAGCCCAAGACTTTAATCCATGAAAATGATGGTTTTCTGAAAGCAGGGAATGCTCATCAGCAATACTTGGTTGATGGCGTTCACCCTGAACCTTTAATCAGTGGTGATGTGTCCAAACCATCTGGTACATATAAAGATATCATTCCCTCAGAAGATGGTCCATTTGTTCAGCAAATTCAACTCAATGTTTCTGGTGTTGGAATTCCAGAACATTCTGGTTACCCATCTCAGCATGTAAATGCATCCTTTGGGACTATTTCATCGCCTGATAAAAGATCAATTGTTTCTGCTAGTGTTAGTGAAGTTCCTGGTAGTGAACCTTTACCATATATGTTATCATCAACTCAGCTCCAGTCAGCCACTAGTTCTGTTGGGCCATGTGTCACATCAGAGCAGCCTTCATTGCATTCTCAGGCTTCTAAAGAGCTACCTCCACAGAGTGGTTTCTCTTCAGTGGAATTACCTGTTCATACTTACCCATTGCCTGCTTCTGTTGTTTCAAATTCCCAGGGTGAAAATGCTGTGCATATGCCACAAATTTCAAGGCAGTATGGTGTGATGCAACAAAgtgctttctttcctttccaatCCACTACCAGAGAAAAGTTTGAACCTTACCCAGCTCCATTACACACGCAGAATGCTCACTTCAGTGTACCACCTAATAGCTCTTGGACATCcttgccactgccaccaccgcCGCCGCTGCCATCAAGAGCGGTGTATAATTCCAGTTTAAACTCAGGAGTTgcaaaatcatatatttcttCCGAATTCAATCAAAGTCAATTGCATTTGAGAACTGACTTTGTTTCTCAGACTTCCATGAAGCCTGTGTTGCCAACTTGTTCTCAGAATTCTGAATTTCAGGATCAAGCATACCCTACAATGCAGGATCATTCACGAACTTTCATGCTTACAGAACCTTTCTCTCCAAAGCATCTCCCTCAGGGGAACCCAGCTAGTCAATTGCTTTCAGGTTCTAGTCTCAATAGAGAAGACTTTCATAATCAACTTTCGATGCaggattcaaaattttcaagtacCACATCATTTGGCAGCCGGCAGCCTCAATCAAACCAATTTTCCTGGAAGGTAGATGTGAACAGACTACAACCTTCTCTGGGTGGCAAGTTGCCTCCTGAAGGACATTTTATGACATCTTCCCACATTGATTCATTATCACAGAAGCAACAATCAATGTATAATTTTCAATGTTCTGTATCTGAGGCTACTTTGGGTGTGCCTAGGGAGACTGCTACTGTTTCCAGATATCCACCTGATTTTCTGGATAGCAATCATTCAACTTCTCTTCCATCTTTTGGGGGATCAAGAATATCTGCTCACTATAATCCTTATGCATCAACCTTTGAGAAACCACTAAATTCCAAATTCAGTTCAAGTATTTTTAGACAGGAAAATGAAATAATCCGTGGTAACAATTATGCTTCTTCTAGATTGAACCATACTCCTGTAAATGGGGAAGGTGATGGTGGGGTTGGATCAAGACAGTCAGCATCTTCATCAAAATCAGCTAGGGCTCTTGGTCAGATTTTACCTAGGTCTGGTGGTGACCAATATGACCCACTTTTTGACAGCATTGAGCCATCTTCCTCTTCtctgaaaaaaaatgattttgatcaGAAGCAGGAAGTTACAGGTGAATCCAACATCAGCCTAAGGCCCAAAAGTTCTTACATGTCTTTGGACGTGGATGAGAAGAACAAGCATGAGGAGGTAGGGGCTGTTGCCTCTACCACTTCTCAAAATAATGATGAATATGGTGAGACAGCAGATGCAGAAGTTGGTGCTGTTGAAAATGAGAGTCTAAGTGATCATGTGGATGTTGAAAAAATGAATACAGGGGAGATTGAGATTAATCAGGTCAAGTCTccagggaaaagaaaaaagagtaaggATTCCAGATCGATGAAATTGTTCAAAGTTTCCATTGCGAACTTTGTAAAGGAGGTTTTGAAACCATCATGGCGGCAAGGTAATATGAGTAAGGTAGCTTTCAAGACCATTGTGAAAAAGACTGTGGATAAAGTGTCAGGAGCCATGAAAGGCCACCGTGTACCCAAGTCCCAAGCAAAGATAAGTCAATATATTGATTCATCACAGCGAAAGTTGACTAAACTTGTCATGGGTTATGTTGACAAGTATGTCAAGGTATGA 4935 0.4107 MYNQVNRGSHFGQSSVPPVLPPPPPPLPYQQAPPHFHQFPPPNIGGPPPPPSSNIGGPPPPPPPPPPSNIGGPPPPPPPAPPHVYLHGPPPPTSSSVPLNLPVQGSLNLIPNAGPSYGIPSQLHHGNTMAPLTAWAPGPPTRVLPPLPRPPPSSSQGQILYNPPFHPPPPQPGDVQNLHNAPPPPPPSVYFHSTVGNYQLPSVAPPPLPSSPPPVLPAPPPLTPPITSASSNAACANEPNSVKVSGLESKAVDSVGGVVASHPSGVVPVHDSDSNWDGVSCREVAGADRDEDLPPPKPTEEKTMKNIEALCHLISEKGADIEDKIRQDEFQNPEYAFLFGGDPGTEAAISHTYFLWMKKKYNLDTGWHEKKRQSEIVYSSGKQYHPHVATVSADSDMEMEDDITLSDKDQGSNYATEVLTQQHNRDDDVFSMNQNIQQLQNLTENDPAKDISSCSTSYFGSKGVSKQNEGPEILSDSEHMKSARSVTKVCSPVNDSTEVAELPLGTALERSAAPQDDDFTRTGTSDHNETTNPDKDYGLLIRSGSPIRLIQDYASDDTSDNEDEDNAADANVFTISGGVDTRISAAHKDSGSYMETDIGSKSSSSTPKGFGLLSRTSQEDSEISPHLVQESKETCKKSVSRWTSNECIEHNLENQVSVNFTASVEAFKGKDGLEGTGIDSGSKIGNAVKEDEGKASKFEPNVLKVDEFGRHLREGLTDSDSDDSRYHRTRRLNKRDRSWSRSRSPPDRRSRRNRRSPRRRKDKRNRSRSWSPRHRRSRSRSPILRRSGDFRGENVKRNKDQCLDFLRGKCYRGASCKYIHHESDMNATSRRYRNKHDLEVSSHPKESKFNGDMKTISSQVLDNERDGVRNQDVDLCQNVTSQEVVQKKKIRGGMMLCQLPFTSMVNLLIAIQETKVVREEPKTLIHENDGFLKAGNAHQQYLVDGVHPEPLISGDVSKPSGTYKDIIPSEDGPFVQQIQLNVSGVGIPEHSGYPSQHVNASFGTISSPDKRSIVSASVSEVPGSEPLPYMLSSTQLQSATSSVGPCVTSEQPSLHSQASKELPPQSGFSSVELPVHTYPLPASVVSNSQGENAVHMPQISRQYGVMQQSAFFPFQSTTREKFEPYPAPLHTQNAHFSVPPNSSWTSLPLPPPPPLPSRAVYNSSLNSGVAKSYISSEFNQSQLHLRTDFVSQTSMKPVLPTCSQNSEFQDQAYPTMQDHSRTFMLTEPFSPKHLPQGNPASQLLSGSSLNREDFHNQLSMQDSKFSSTTSFGSRQPQSNQFSWKVDVNRLQPSLGGKLPPEGHFMTSSHIDSLSQKQQSMYNFQCSVSEATLGVPRETATVSRYPPDFLDSNHSTSLPSFGGSRISAHYNPYASTFEKPLNSKFSSSIFRQENEIIRGNNYASSRLNHTPVNGEGDGGVGSRQSASSSKSARALGQILPRSGGDQYDPLFDSIEPSSSSLKKNDFDQKQEVTGESNISLRPKSSYMSLDVDEKNKHEEVGAVASTTSQNNDEYGETADAEVGAVENESLSDHVDVEKMNTGEIEINQVKSPGKRKKSKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHRVPKSQAKISQYIDSSQRKLTKLVMGYVDKYVKV 1644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 1227 1246 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 202 226 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 138 153 - -
Ssu1g2020 1644 ProSiteProfiles Zinc finger C3H1-type profile. 796 823 IPR000571 GO:0046872
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 588 629 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 1401 1484 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 514 533 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 1042 1068 - -
Ssu1g2020 1644 SUPERFAMILY Surp module (SWAP domain) 294 361 IPR035967 GO:0003723|GO:0006396
Ssu1g2020 1644 Gene3D - 795 883 - -
Ssu1g2020 1644 Gene3D Surp module 279 364 IPR035967 GO:0003723|GO:0006396
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 1 237 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 714 729 - -
Ssu1g2020 1644 PANTHER EXPRESSED PROTEIN 1 1644 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 162 190 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 747 781 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 714 792 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 1419 1434 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 16 97 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 595 624 - -
Ssu1g2020 1644 MobiDBLite consensus disorder prediction 504 540 - -
Ssu1g2020 1644 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 1644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2020 Ssu-Chr1 57301303 57309086 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu1g2020 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2020 - - gmx:100807768 2313.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2020 1 57301303 57309086 Ssu1g2020 1 57301303 57309086 ECH