Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2016 ATGCTCGGGGGGGCAACATACCATTTACCACCAGCAATGGCGTTGCGGGCCGCATCTGCAACCGTTCCGCGATTTCTCCGAAACAGTTCCACTCTCTCCACCACCGCCACTCAATCCCAATCCCACTACAGAAAACAGGTCGCCCTCGCCACCCTCTTCCGAAAGTACGGCTTCCCCTCGTCCCTCCTCCCCTCCTTCCTCTCCCGCAACCCCTCCCTCCTCCGCTCCCCCCTCCCCCGCCTCCGCCAGTCCCTCGCCGCCCTCTTCTCCCTCGGCATCCCCCAGAACGCCGTCGTTTCCCTCCTCACCTCCTGCCCCTCCGTCCTCGACCCCGCCTTCCTCGAAACCTTCGAGTCGCATTTCCCCCAGCTCAAATCCCGCTCCCCCCAGACCCTCGTCAACCTCCTGCTCTGTTCCAGAAGGTTCCACCTCGACCCCCGCGAGCTCTCCCGCAGACTCGACGCCCTCAACGGCTTCGCGTTTTCCGAGGCCGCAGTCGCCAGCGTCCTGGAAGGGTTCCCCGACGCGCTTGCGGCGAGTGAGGCTGAGATCGCGGGCGCGGTTAATTTTCTCGCGGAAGTCGGGATCCCCGGGGACGAGATTGATTCCATCGTCCGCATGTTTCCTAGGGTTCTGGGGCTCGGGGTCGAGAACAGGTTGAGGCCGTTGATTTCTGAGATCAGAGGGCTAGGGTTTTCCCTCCGCGAGGTGAGGCGGGAGATCTCGAGGGATCCGAGGATTCTGGGGATGGAGGTTGGGGAGTTTTCGCGGTGTCTGAGGTTGCTGGAGAGTCTGAAGTGCAGGGAAACGATCAAGGAGAGGGTCACAGGGGAGGGTCTAGTGAGGGCGTGTTTTGAGGTGAAACTGAGAGCGGACTGCTTGTGCGGTTACGGTCTGACTCGAAGGGACGCTCTGAAGGTTCTGTGGAAGGAGCCGAGGGTGATTGGTTACGACGTGGGGGATATTGAGAGGAAGGTTGAGTTTTTGGTGCAGAGAATGAAGTGTGGGGTGGAGTGCTTGGCCGACGTGCCTAGATACCTGGGTGTGAATTTTGAGAAGCAGATTGTGCCCAGGTACGGTGTGGTGGAGTATTTGAGAGGGAAGGGTGCGATTGGGTTTGAGGTTGGGTTAAATGATTTGGTTATGCCCACTAGGCTTAGGTTTTACAATCTTTACGTGAAGCCCTACCCGGAGTGTGAGAAGATATACGGGAGGTTTTCCGGGGGTGTTGAAGTTAAGAGGAGGCATCCCGCTGGACTGTGGAAACTGTTTAAGCCGCAGAAGTTTCGTGAAAGTGGCGAAGATGTGAAGAATATGAGGTCCTTCATGGAGGCACTGGCGTAG 1344 0.5841 MLGGATYHLPPAMALRAASATVPRFLRNSSTLSTTATQSQSHYRKQVALATLFRKYGFPSSLLPSFLSRNPSLLRSPLPRLRQSLAALFSLGIPQNAVVSLLTSCPSVLDPAFLETFESHFPQLKSRSPQTLVNLLLCSRRFHLDPRELSRRLDALNGFAFSEAAVASVLEGFPDALAASEAEIAGAVNFLAEVGIPGDEIDSIVRMFPRVLGLGVENRLRPLISEIRGLGFSLREVRREISRDPRILGMEVGEFSRCLRLLESLKCRETIKERVTGEGLVRACFEVKLRADCLCGYGLTRRDALKVLWKEPRVIGYDVGDIERKVEFLVQRMKCGVECLADVPRYLGVNFEKQIVPRYGVVEYLRGKGAIGFEVGLNDLVMPTRLRFYNLYVKPYPECEKIYGRFSGGVEVKRRHPAGLWKLFKPQKFRESGEDVKNMRSFMEALA 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2016 447 PANTHER CGI-12 PROTEIN-RELATED 61 445 IPR003690 GO:0003690|GO:0006355
Ssu1g2016 447 Gene3D Transcription termination factor 3, mitochondrial 183 406 IPR038538 -
Ssu1g2016 447 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL 61 445 - -
Ssu1g2016 447 Pfam mTERF 290 371 IPR003690 GO:0003690|GO:0006355
Ssu1g2016 447 Pfam mTERF 66 255 IPR003690 GO:0003690|GO:0006355
Ssu1g2016 447 SMART mt_12 337 371 IPR003690 GO:0003690|GO:0006355
Ssu1g2016 447 SMART mt_12 64 94 IPR003690 GO:0003690|GO:0006355
Ssu1g2016 447 SMART mt_12 167 197 IPR003690 GO:0003690|GO:0006355
Ssu1g2016 447 SMART mt_12 305 336 IPR003690 GO:0003690|GO:0006355
Ssu1g2016 447 SMART mt_12 238 268 IPR003690 GO:0003690|GO:0006355
Ssu1g2016 447 SMART mt_12 202 233 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu1g2016 mTERF 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2016 - - gmx:100783135 603.594