Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2014 ATGGAACACACCATGTTACCTGCCATTGGATCTGTTCTCCCTCGTGGTGCCTTGGCAGTCTTGCTCCTGTTACtgttttctttctccacattcACTTCTACAGAAGCCTATGATCCGCTTGATCCAACTGGCAATATAACAATCAAATGGGATGTCATTAGCTGGACTCCAGATGGCTATCTTGCTGTTGTTACAATGTACAACTTTCAACAATATCGCCATATTCAGGCCCCTGGATGGTCACTAGGGTGGACATGGGCTAAAAAAGAAGTAATTTGGAACATGGTGGGAGGCCAAACCACAGAGCAAGGGGACTGTTCAAAGTTCAAAGCAGGCATTCCACATTGCTGTAAGAAGGACCCAACAGTGGTGGATTTACTGCCAGGGACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGGGGTGTCTTAAATTCATGGGGTCAGGACCCCAGCAATGCAGTAAGTTCTTTCCAGGTTAGTGTTGGTTCTGCTGGAACAACAAACAAAACGGTCAAACTCCCTAAAAATTTTACTCTCAAAGCACCAGGACCTGGCTATACTTGTGGTCCTGCAAAGGTTGTGAAACCAACTACATTTATTACCAATGACAAGAGGAGAATCACCCAAGCCATGATGACCTGGAATATTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGACACCAAGTTGTTGTGTTTCCCTCTCATCCTTCTATAATGACACAGTAGTAAACTGCCCAACCTGCACCTGTGGCtgccaaaacaaaacagaaccTGGCAGCTGCGTAGATCCAAATTCCCCACATTTAGCTTCAGTTGTATCATCATCAGGCAAAGCTGCAAACACACCTCTAGTTCAGTGTACCAGCCATATGTGTCCTATTCGAGTGCATTGGCACGTGAAGCTCAATTACAAAGAGTACTGGAGGGTCAAGATCACAATCACAAATTTCAATTACAGAATGAACTACTCACAATGGAACCTTGTTGTGCAGCATCCCAATTTAGATAATATTACCCAGCTCTTCAGTTTTCAGTACAAGTCACTAACACCCTATGAGGGCTTGAATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACaatgattttctttcttctgCTGGACCTCTTGGTAATGTTCAGTCAGAACTCTTACTTCGAAAAGACAAATCAACCTTCACATTTGATAAGGGATGGGCCTTCCCAAGAAGGATTTATTTCAATGGGGATAACTGTGTTATGCCTCCTCCAGATGCCTACCCTTGGCTGCCAAATGCAAGTTCTAAACTAGTTTTCTCTTTACTAAGTACAGTCATAGCCACTTTAGCTTCTTTGTTAATCTTATTGAATCAATCATAG 1368 0.4159 MEHTMLPAIGSVLPRGALAVLLLLLFSFSTFTSTEAYDPLDPTGNITIKWDVISWTPDGYLAVVTMYNFQQYRHIQAPGWSLGWTWAKKEVIWNMVGGQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWGQDPSNAVSSFQVSVGSAGTTNKTVKLPKNFTLKAPGPGYTCGPAKVVKPTTFITNDKRRITQAMMTWNITCTYSQFLAQKTPSCCVSLSSFYNDTVVNCPTCTCGCQNKTEPGSCVDPNSPHLASVVSSSGKAANTPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYRMNYSQWNLVVQHPNLDNITQLFSFQYKSLTPYEGLNDTSMLWGVKFYNDFLSSAGPLGNVQSELLLRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSKLVFSLLSTVIATLASLLILLNQS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2014 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0031225
Ssu1g2014 455 PANTHER COBRA-LIKE PROTEIN 10 452 - -
Ssu1g2014 455 PIRSF COBRA 11 454 IPR006918 GO:0010215|GO:0031225
Ssu1g2014 455 PANTHER PROTEIN COBRA 10 452 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2014 Ssu-Chr1 57137293 57140473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2014 18 452 COBRA Gene Family AT3G02210 73.165 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2014 - - gmx:100815779 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2014 1 57137293 57140473 Ssu1g2014 1 57137293 57140473 ECH